BAC Information

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BAC

Clone NameB6Ng01-339L14
Chromosome1 (Build37)
Map Location 69,507,418 - 69,657,922
singlet/doubletdoublet
Overlap geneIkzf2
Upstream geneErbb4, LOC667842, EG241084
Downstream geneSpag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339L14.bB6Ng01-339L14.g
ACCGA123638GA123639
length1,0821,118
definitionB6Ng01-339L14.b B6Ng01-339L14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,656,832 - 69,657,922)(69,507,418 - 69,508,526)
sequence
gaattctttgcttgagcccagctaggggatgctgagctagtggctgctgt
gtaaatgccatagtggggtctttctgaaagaactgatagccctggtggtg
actacttaaaaagcgagtcatctccagatgtctttagggatatagaaaaa
agagtcctctattcatgtttgtgtgcgaataaaaccaaaatcccgtcact
ctcctgctttatcccaggtcatcagaatcactctactttcttctagccag
ataggaaagatagaattattttaatgagcttagtcgtagtaaaagtaaat
cagtttcatttgtggtgtctagcccctaagcgcacccgaactagtcaaac
atttacagcattccaggaattctttccctgaattctacaggctcgaattt
ggagttgcatttaaacagtgagaaatattgctggatgtgagatccactag
tgtagtattgatgggaaaatccaacatcattttcctgcatctaagcactt
cttggtgggaccatgtcctagtaggcagcagcctcacattgtgtaactgt
tgacgatagcattttggtgctacctgtagtttagggtagcaattgtcctt
taccctacatctcaccactacagaaacacttgctaacttctaatcacttg
cttctcaaatttaagagcttggccagagtgatgccggaaagtctgcattt
tccagtgagtaacgtccatctcttctggggatcttgacacccccctatca
ttaacaagtcctcagattcctttagagaatggagcaaggagaccagcccc
cccccaaatgtatagtaaagcataaccaggttgtacccgaggataagtta
tttctcaatagagtgcattgtgctggctgccaagcgaacccaacatcttc
ttgcctccttccttctacagattatattgtggtttcagtgttgttctcag
gtcagtttccctggtcattaatgctgcaacactctgctgagtagatatct
actctctggttcttttattacacactgtgtacagcactgagactcaaggc
ctgagctgtttgtaattaaaccttgaaatagt

gaattcatagtcactgggtatgggagtataacttctgaccaactgtgaga
acattagtcactggtgattgggagaacaaagggagatttataaaagtggt
gagccagaaaggtaaaacacatacctggaggaacagagcagaaaagagga
gggaaccatcttcttggcaccccaacacctgaccacttgacacttccttt
aagaggtagaatttatattgttcccataatccaaccagagaaactgaaat
ttaaagaaaagtccttagtcttaagtaattttctggaattccaagtgcta
agcaaaaaggacctactcacaacctaaataggaaaagaactcagtgtgta
aacactttccatgatactaaattccaagaaaacttagctcacatcctctg
agatagattgatgacagttggtgcctggaaaggcatgctttgccaaggcc
gtacttaggtacttcagaaagatctagctcaaaggcattttacccacagt
atctgcaaagagatctctgagagtgactaaggtttgaccagcaagccttt
gttgagtcatcctcctcagaaataccactctgattcatcaactatgcttt
ttatgttaattgcatgtaacatctgacatcttcgttaccctttctccaca
tcactgaatcctaagaagaaaatgagacgagccaaacccagattatggct
gaagttaaaactgagcattagtgaattaaagtgaaacttgaatgagttca
atataccatgaaattcaaaagaaggttttatatctcataaggtaaaaaaa
gaatagtgatgttatcttaatgttgatgttatattttgtctacaggttgt
agaatataaactacatccttttacataaatccatactaatatgattattg
caagaaatataatttatcaggaaggcagagtcttttttaaaaattgctgt
cttttttttatcgttataaaatttgcaaaatgagtcacagtaaacgtatt
agggtctccgaaccttgttagcctatgcataataaagtggcccatggcct
tttcagctggaaatgaatatttgagcatctaaaattagtacttcaaaaaa
tgtctttcaatcctggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_69656832_69657922
seq2: B6Ng01-339L14.b_48_1129 (reverse)

seq1  ACTATTTTTAAAGTTTTATTTACAAACAGCTTCAGCCCTTGAGTCTCCAG  50
      ||||  ||| ||| |||| ||||||||||| |||| |||||||||| |||
seq2  ACTA--TTTCAAGGTTTAATTACAAACAGC-TCAGGCCTTGAGTCT-CAG  46

seq1  TGCTGGTTACACAGTGGTGTAATAAAAGAACCAGAGAGTAGATATCTACT  100
      |||||  |||||||| ||||||||||||||||||||||||||||||||||
seq2  TGCTG--TACACAGT-GTGTAATAAAAGAACCAGAGAGTAGATATCTACT  93

seq1  CAGCAGAGGTGTTGCAGCATTAATGACCAGGGAAACTGACCTGAGAACAA  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGA-GTGTTGCAGCATTAATGACCAGGGAAACTGACCTGAGAACAA  142

seq1  CACCTGAAACCACAATATAATCTGTAGAAGGAAGGAGGCAAGAAGATGTT  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-CTGAAACCACAATATAATCTGTAGAAGGAAGGAGGCAAGAAGATGTT  191

seq1  GGGTTCGCTTGGCAGCCAGCACAATGCACTCTATTGAGAAATAACTTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCGCTTGGCAGCCAGCACAATGCACTCTATTGAGAAATAACTTATC  241

seq1  CTCGGGTACAACCTGGTTATGCTTTACTATACATTTGGGGGGGGGCTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGTACAACCTGGTTATGCTTTACTATACATTTGGGGGGGGGCTGGT  291

seq1  CTCCTTGCTCCATTCTCTAAAGGAATCTGAGGACTTGTTAATGATAGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGCTCCATTCTCTAAAGGAATCTGAGGACTTGTTAATGATAGGGG  341

seq1  GGTGTCAAGATCCCCAGAAGAGATGGACGTTACTCACTGGAAAATGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCAAGATCCCCAGAAGAGATGGACGTTACTCACTGGAAAATGCAGA  391

seq1  CTTTCCGGCATCACTCTGGCCAAGCTCTTAAATTTGAGAAGCAAGTGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCGGCATCACTCTGGCCAAGCTCTTAAATTTGAGAAGCAAGTGATT  441

seq1  AGAAGTTAGCAAGTGTTTCTGTAGTGGTGAGATGTAGGGTAAAGGACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTAGCAAGTGTTTCTGTAGTGGTGAGATGTAGGGTAAAGGACAAT  491

seq1  TGCTACCCTAAACTACAGGTAGCACCAAAATGCTATCGTCAACAGTTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACCCTAAACTACAGGTAGCACCAAAATGCTATCGTCAACAGTTACA  541

seq1  CAATGTGAGGCTGCTGCCTACTAGGACATGGTCCCACCAAGAAGTGCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGAGGCTGCTGCCTACTAGGACATGGTCCCACCAAGAAGTGCTTA  591

seq1  GATGCAGGAAAATGATGTTGGATTTTCCCATCAATACTACACTAGTGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGGAAAATGATGTTGGATTTTCCCATCAATACTACACTAGTGGAT  641

seq1  CTCACATCCAGCAATATTTCTCACTGTTTAAATGCAACTCCAAATTCGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATCCAGCAATATTTCTCACTGTTTAAATGCAACTCCAAATTCGAG  691

seq1  CCTGTAGAATTCAGGGAAAGAATTCCTGGAATGCTGTAAATGTTTGACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGAATTCAGGGAAAGAATTCCTGGAATGCTGTAAATGTTTGACTA  741

seq1  GTTCGGGTGCGCTTAGGGGCTAGACACCACAAATGAAACTGATTTACTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGGGTGCGCTTAGGGGCTAGACACCACAAATGAAACTGATTTACTTT  791

seq1  TACTACGACTAAGCTCATTAAAATAATTCTATCTTTCCTATCTGGCTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACGACTAAGCTCATTAAAATAATTCTATCTTTCCTATCTGGCTAGA  841

seq1  AGAAAGTAGAGTGATTCTGATGACCTGGGATAAAGCAGGAGAGTGACGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTAGAGTGATTCTGATGACCTGGGATAAAGCAGGAGAGTGACGGG  891

seq1  ATTTTGGTTTTATTCGCACACAAACATGAATAGAGGACTCTTTTTTCTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGTTTTATTCGCACACAAACATGAATAGAGGACTCTTTTTTCTAT  941

seq1  ATCCCTAAAGACATCTGGAGATGACTCGCTTTTTAAGTAGTCACCACCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTAAAGACATCTGGAGATGACTCGCTTTTTAAGTAGTCACCACCAG  991

seq1  GGCTATCAGTTCTTTCAGAAAGACCCCACTATGGCATTTACACAGCAGCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATCAGTTCTTTCAGAAAGACCCCACTATGGCATTTACACAGCAGCC  1041

seq1  ACTAGCTCAGCATCCCCTAGCTGGGCTCAAGCAAAGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTCAGCATCCCCTAGCTGGGCTCAAGCAAAGAATTC  1082


seq1: chr1_69507418_69508526
seq2: B6Ng01-339L14.g_67_1184

seq1  GAATTCATAGTCACTGGGTATGGGAGTATAACTTCTGACCAACTGTGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGTCACTGGGTATGGGAGTATAACTTCTGACCAACTGTGAGA  50

seq1  ACATTAGTCACTGGTGATTGGGAGAACAAAGGGAGATTTATAAAAGTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGTCACTGGTGATTGGGAGAACAAAGGGAGATTTATAAAAGTGGT  100

seq1  GAGCCAGAAAGGTAAAACACATACCTGGAGGAACAGAGCAGAAAAGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGAAAGGTAAAACACATACCTGGAGGAACAGAGCAGAAAAGAGGA  150

seq1  GGGAACCATCTTCTTGGCACCCCAACACCTGACCACTTGACACTTCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCATCTTCTTGGCACCCCAACACCTGACCACTTGACACTTCCTTT  200

seq1  AAGAGGTAGAATTTATATTGTTCCCATAATCCAACCAGAGAAACTGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTAGAATTTATATTGTTCCCATAATCCAACCAGAGAAACTGAAAT  250

seq1  TTAAAGAAAAGTCCTTAGTCTTAAGTAATTTTCTGGAATTCCAAGTGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAAAAGTCCTTAGTCTTAAGTAATTTTCTGGAATTCCAAGTGCTA  300

seq1  AGCAAAAAGGACCTACTCACAACCTAAATAGGAAAAGAACTCAGTGTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAAGGACCTACTCACAACCTAAATAGGAAAAGAACTCAGTGTGTA  350

seq1  AACACTTTCCATGATACTAAATTCCAAGAAAACTTAGCTCACATCCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTTCCATGATACTAAATTCCAAGAAAACTTAGCTCACATCCTCTG  400

seq1  AGATAGATTGATGACAGTTGGTGCCTGGAAAGGCATGCTTTGCCAAGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATTGATGACAGTTGGTGCCTGGAAAGGCATGCTTTGCCAAGGCC  450

seq1  GTACTTAGGTACTTCAGAAAGATCTAGCTCAAAGGCATTTTACCCACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTAGGTACTTCAGAAAGATCTAGCTCAAAGGCATTTTACCCACAGT  500

seq1  ATCTGCAAAGAGATCTCTGAGAGTGACTAAGGTTTGACCAGCAAGCCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCAAAGAGATCTCTGAGAGTGACTAAGGTTTGACCAGCAAGCCTTT  550

seq1  GTTGAGTCATCCTCCTCAGAAATACCACTCTGATTCATCAACTATGCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGTCATCCTCCTCAGAAATACCACTCTGATTCATCAACTATGCTTT  600

seq1  TTATGTTAATTGCATGTAACATCTGACATCTTCGTTACCCTTTCTCCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTAATTGCATGTAACATCTGACATCTTCGTTACCCTTTCTCCACA  650

seq1  TCACTGAATCCTAAGAAGAAAATGAGACGAGCCAAACCCAGATTATGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAATCCTAAGAAGAAAATGAGACGAGCCAAACCCAGATTATGGCT  700

seq1  GAAGTTAAAACTGAGCATTAGTGAATTAAAGTGAAACTTGAATGAGTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTAAAACTGAGCATTAGTGAATTAAAGTGAAACTTGAATGAGTTCA  750

seq1  ATATACCATGAAATTCAAAAGAAGGTTTTATATCTCATAAGGTAAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACCATGAAATTCAAAAGAAGGTTTTATATCTCATAAGGTAAAAAAA  800

seq1  GAATAGTGATGTTATCTTAATGTTGATGTTATATTTTGTCTACAGGTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTGATGTTATCTTAATGTTGATGTTATATTTTGTCTACAGGTTGT  850

seq1  AGAATATAAACTACATCCTTTTACATAAATCCATACTAATATGATTATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATAAACTACATCCTTTTACATAAATCCATACTAATATGATTATTG  900

seq1  CAAGAAATATAA-TTATCAGGAAGGCAGAGTC-TTTTTAAAAATTGCTGT  948
      |||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  CAAGAAATATAATTTATCAGGAAGGCAGAGTCTTTTTTAAAAATTGCTGT  950

seq1  C-TTTTTTAATCGTTATAAAA-TTGCAAAATGAGTCACAGTAAACGTAT-  995
      | |||||| |||||||||||| ||||||||||||||||||||||||||| 
seq2  CTTTTTTTTATCGTTATAAAATTTGCAAAATGAGTCACAGTAAACGTATT  1000

seq1  -AGGTCTTCCCGAACC-TGTTAGCTATTGCATAATAAAGTGGGCCATGGC  1043
        |||||  ||||||| |||||||   ||||||||||||||| |||||||
seq2  AGGGTCT--CCGAACCTTGTTAGCCTATGCATAATAAAGTGGCCCATGGC  1048

seq1  C-TTTCAG-TTGAAATTGATATTTGAGCATCTAAAATAAGTAC-TCAAAA  1090
      | |||||| | |||||  ||||||||||||||||||| ||||| ||||||
seq2  CTTTTCAGCTGGAAATGAATATTTGAGCATCTAAAATTAGTACTTCAAAA  1098

seq1  AATGTC-TTCAATCCTGGAT  1109
      |||||| |||||||||||||
seq2  AATGTCTTTCAATCCTGGAT  1118


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