BAC Information

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BAC

Clone NameB6Ng01-341G08
Chromosome1 (Build37)
Map Location 82,428,628 - 82,532,997
singlet/doubletdoublet
Overlap geneRhbdd1, Col4a4
Upstream geneEG621020, LOC433328, EG665145, Irs1
Downstream geneCol4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341G08.bB6Ng01-341G08.g
ACCGA124788GA124789
length1,1271,141
definitionB6Ng01-341G08.b B6Ng01-341G08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,428,628 - 82,429,768)(82,531,855 - 82,532,997)
sequence
gaattctcctggcaaaaaccattgtgtgaaaggggctttgtagatttcta
aaactcatggaatactctgctctgaagttctggtcagtccagttctttgc
aaaggaaaaaaaaaaaaaaagtcaggccacattctgactgtccttacaca
gctgtccattccctgaactaccacggtatcaggccttgccacagtgagag
ctgagcaactcagtctaacctgctctctcttcctcctctccttctgtctg
acatccctctggattaggacaaggattgggaccagaccaggtaggaggtc
cgagaaaggatacacagagagaggtgtgacagcgaaccttgattgtgaac
gtgtttaaattaagaaaatcctagatctggggctggagggatggctcagc
cattaggaatgcctactgctctagccgaggacccaggttcagttcccagc
actcacagggtgactcacaaccacatgtaactccaggcccaggcaatcca
atgcctgtttctggagaatgccccgcatgcaagaggtgcacatacactca
caaagcctcacacagatgcacagaaataaagatcagttttagccaaggaa
atttccacattagtataacacacctgtgtgtgtgctgcataactgagtgg
tttaatcccttggtggatctaaactaggactgcggaagttataatatgac
tgcagtgttacaaggtactaaaaaagtatgaggtgcaccttggttgaagg
aagtaggtccccggagtgtgtctttggaaattatgtcctgacctggcccc
ttcctgttttgccctattctgcttcctgtccagcaggaggaaaggtcctc
tgcctcatactcctgttgctaccatgttcttacccatgcatgtggtgcca
agcagccctgcaccgaactctgaagcccggagcaaaatgaacctttccct
taaatcgtttctgccagtaatgcgttacagcgttgaagaacggtaactgc
tacagtcggagcggctgtgcaagttagcagacactgcacttagcatcttc
actgtagaacatctgcactgtgcagtctacagctcagtctgacagttcac
cgacatacatagttcatctttctgact
gaattcattgagctatttcacttactgcctaaaaatgttctaaacagcag
gggcatagtggggacatgcctttataggaaagagttttaggcaggcaggt
ttctgagctccagagcagcctaaactaaatagccaattcctggttagcca
ctgctacatattgataccttgtctcaaaagtcagctagctagccaagcaa
ccagccaaacaaaatgggagcagtttcaccaaagggaagctgctgtgaag
tttgaaaaaagccttagaagatcatacaagctcttctttgatacaaatac
cgaaatgggccgagtaattaaattgaaaaattacatacttttaagagtaa
tgccttgtattatagtatgagaaaaacgtagtctttctaccccataatta
gtaactgaccattggtgagtggttggtctaattgaatggctgagtacagg
tgtatgaaaaccttggacctcaggctgataacaatcaaggagaccataat
tccatcccagtgaaatggctacagtgctttttactggtgactaatatttc
atatagaagagaaaatactgaaatggcagcctactttttcctaagtgaat
gtctccttttcagggtcagcctggggaaaatggagaaaaaggaagatctg
tgtacattactggtggcgttaaaggtattcaggtaagttttatggccatt
gtgcgtttgacaaagccattttcccaataggaaacacacgggcagggatt
ttctataaagtattattggatgtactgatttattttattttactttgcca
ttaacctcatacaacagatggctctgttccccttgtggagaggcatgggc
cttagtctctggctgtagattgccttgcctctgagacattcagagttata
aggaaggacacatccatttcaaggctccttgggatcatcattgttatttt
ggatcaggttgtcagttgctatggactgacccaagctctgagacacttga
gaggctttggttgaacagcatgtgagactaataccacagaaatgacaaca
cctaaagtgtagacagtaccttaagtgtaacttgtgtttagaaaagagcc
tgcatctagagcatgccacaacactctgaattgtcatgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_82428628_82429768
seq2: B6Ng01-341G08.b_44_1170

seq1  GAATTCTCCTGGCAAAAACCATTGTGTGAAAGGGGCTTTGTAGATTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGGCAAAAACCATTGTGTGAAAGGGGCTTTGTAGATTTCTA  50

seq1  AAACTCATGGAATACTCTGCTCTGAAGTTCTGGTCAGTCCAGTTCTTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCATGGAATACTCTGCTCTGAAGTTCTGGTCAGTCCAGTTCTTTGC  100

seq1  AAAGGAAAAAAAAAAAAAAAGTCAGGCCACATTCTGACTGTCCTTACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAAAAAAAAAAAAAGTCAGGCCACATTCTGACTGTCCTTACACA  150

seq1  GCTGTCCATTCCCTGAACTACCACGGTATCAGGCCTTGCCACAGTGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCATTCCCTGAACTACCACGGTATCAGGCCTTGCCACAGTGAGAG  200

seq1  CTGAGCAACTCAGTCTAACCTGCTCTCTCTTCCTCCTCTCCTTCTGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAACTCAGTCTAACCTGCTCTCTCTTCCTCCTCTCCTTCTGTCTG  250

seq1  ACATCCCTCTGGATTAGGACAAGGATTGGGACCAGACCAGGTAGGAGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCTCTGGATTAGGACAAGGATTGGGACCAGACCAGGTAGGAGGTC  300

seq1  CGAGAAAGGATACACAGAGAGAGGTGTGACAGCGAACCTTGATTGTGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAAAGGATACACAGAGAGAGGTGTGACAGCGAACCTTGATTGTGAAC  350

seq1  GTGTTTAAATTAAGAAAATCCTAGATCTGGGGCTGGAGGGATGGCTCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAAATTAAGAAAATCCTAGATCTGGGGCTGGAGGGATGGCTCAGC  400

seq1  CATTAGGAATGCCTACTGCTCTAGCCGAGGACCCAGGTTCAGTTCCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGAATGCCTACTGCTCTAGCCGAGGACCCAGGTTCAGTTCCCAGC  450

seq1  ACTCACAGGGTGACTCACAACCACATGTAACTCCAGGCCCAGGCAATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAGGGTGACTCACAACCACATGTAACTCCAGGCCCAGGCAATCCA  500

seq1  ATGCCTGTTTCTGGAGAATGCCCCGCATGCAAGAGGTGCACATACACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGTTTCTGGAGAATGCCCCGCATGCAAGAGGTGCACATACACTCA  550

seq1  CAAAGCCTCACACAGATGCACAGAAATAAAGATCAGTTTTAGCCAAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCTCACACAGATGCACAGAAATAAAGATCAGTTTTAGCCAAGGAA  600

seq1  ATTTCCACATTAGTATAACACACCTGTGTGTGTGCTGCATAACTGAGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCACATTAGTATAACACACCTGTGTGTGTGCTGCATAACTGAGTGG  650

seq1  TTTAATCCCTTGGTGGATCTAAACTAGGACTGCGGAAGTTATAATATGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCCCTTGGTGGATCTAAACTAGGACTGCGGAAGTTATAATATGAC  700

seq1  TGCAGTGTTACAAGGTACTAAAAAAGTATGAGGTGCACCTTGGTTGAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGTTACAAGGTACTAAAAAAGTATGAGGTGCACCTTGGTTGAAGG  750

seq1  AAGTAGGTCCCCGGAGTGTGTCTTTGGAAATTATGTCCTGACCTGGCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGTCCCCGGAGTGTGTCTTTGGAAATTATGTCCTGACCTGGCCCC  800

seq1  TTCCTGTTTTGCCCTATTCTGCTTCCTGTCCAGCAGGAGGAAAGGTCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTTTGCCCTATTCTGCTTCCTGTCCAGCAGGAGGAAAGGTCCTC  850

seq1  TGCCTCATACTCCTGTTGCTACCATGTTCTTACCCATGCATGTGGTGCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCATACTCCTGTTGCTACCATGTTCTTACCCATGCATGTGGTGCCA  900

seq1  AGCAGCCCTGCACCGAACTCTGAAGCCCGGAGCAAAATGAACC-TTCCCT  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGCAGCCCTGCACCGAACTCTGAAGCCCGGAGCAAAATGAACCTTTCCCT  950

seq1  TAAATCGTTTCTGCCAGTAATGCGGTTACAGCGGTG-AGAACGGTAACTG  998
      ||||||||||||||||||||||| ||||||||| || |||||||||||||
seq2  TAAATCGTTTCTGCCAGTAATGC-GTTACAGCGTTGAAGAACGGTAACTG  999

seq1  CTACAGGTCGGAGCGGCTGTGCAAGTTAGCAGGAACCACTGCACTTAGGC  1048
      ||||| ||||||||||||||||||||||||||    ||||||||||| ||
seq2  CTACA-GTCGGAGCGGCTGTGCAAGTTAGCAG---ACACTGCACTTA-GC  1044

seq1  ATCCTTCACTGTTAGACATCCTGCACTGTTGCAGTCCTTACAGCCTTCAG  1098
      || |||||||||   |||| |||||||| |||||||  ||||||  ||||
seq2  AT-CTTCACTGTAGAACAT-CTGCACTG-TGCAGTC--TACAGC--TCAG  1087

seq1  TCTTGACAG-TCACCGCACATTACATAGTTTCATCTTTCTGACT  1141
      || |||||| |||||| ||| ||||||| |||||||||||||||
seq2  TC-TGACAGTTCACCG-ACA-TACATAG-TTCATCTTTCTGACT  1127

seq1: chr1_82531855_82532997
seq2: B6Ng01-341G08.g_66_1206 (reverse)

seq1  TTGCATGACAA-TCAGAGTG-TGT-GCATGCTCTTAGATGCAGGCTC-TT  46
      ||||||||||| |||||||| ||| |||||||| ||||||||||||| ||
seq2  TTGCATGACAATTCAGAGTGTTGTGGCATGCTC-TAGATGCAGGCTCTTT  49

seq1  TCTAAACACAAGTTACACTTAAGGTACTGTCCTTACACTTTTAGGTGTTG  96
      |||||||||||||||||||||||||||||||  ||||| |||||||||||
seq2  TCTAAACACAAGTTACACTTAAGGTACTGTC--TACAC-TTTAGGTGTTG  96

seq1  TCATTTCTGTGGTATTAGTCTCACATGGCTGTTCAACCAAAGCCTCTTCA  146
      |||||||||||||||||||||||||| ||||||||||||||||||| |||
seq2  TCATTTCTGTGGTATTAGTCTCACAT-GCTGTTCAACCAAAGCCTC-TCA  144

seq1  AGTGTCTCAGAGCCTTGGGTCAGTCCATAGCAACTGACAACCTGATCC-A  195
      |||||||||||| ||||||||||||||||||||||||||||||||||| |
seq2  AGTGTCTCAGAG-CTTGGGTCAGTCCATAGCAACTGACAACCTGATCCAA  193

seq1  AATAACAATGATGATCCCAAGGAGCCTTGAAATGGATGTGTCCTTCCTTA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAATGATGATCCCAAGGAGCCTTGAAATGGATGTGTCCTTCCTTA  243

seq1  TAACTCTGAATGTCTCAGAGGCAAGGCAATCTACAGCCAGAGACTAAGGC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTGAATGTCTCAGAGGCAAGGCAATCTACAGCCAGAGACTAAGGC  293

seq1  CCATGCCTCTCCACAAGGGGAACAGAGCCATCTGTTGTATGAGGTTAATG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCTCTCCACAAGGGGAACAGAGCCATCTGTTGTATGAGGTTAATG  343

seq1  GCAAAGTAAAATAAAATAAATCAGTACATCCAATAATACTTTATAGAAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTAAAATAAAATAAATCAGTACATCCAATAATACTTTATAGAAAA  393

seq1  TCCCTGCCCGTGTGTTTCCTATTGGGAAAATGGCTTTGTCAAACGCACAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCCCGTGTGTTTCCTATTGGGAAAATGGCTTTGTCAAACGCACAA  443

seq1  TGGCCATAAAACTTACCTGAATACCTTTAACGCCACCAGTAATGTACACA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATAAAACTTACCTGAATACCTTTAACGCCACCAGTAATGTACACA  493

seq1  GATCTTCCTTTTTCTCCATTTTCCCCAGGCTGACCCTGAAAAGGAGACAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCCTTTTTCTCCATTTTCCCCAGGCTGACCCTGAAAAGGAGACAT  543

seq1  TCACTTAGGAAAAAGTAGGCTGCCATTTCAGTATTTTCTCTTCTATATGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAGGAAAAAGTAGGCTGCCATTTCAGTATTTTCTCTTCTATATGA  593

seq1  AATATTAGTCACCAGTAAAAAGCACTGTAGCCATTTCACTGGGATGGAAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAGTCACCAGTAAAAAGCACTGTAGCCATTTCACTGGGATGGAAT  643

seq1  TATGGTCTCCTTGATTGTTATCAGCCTGAGGTCCAAGGTTTTCATACACC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTCTCCTTGATTGTTATCAGCCTGAGGTCCAAGGTTTTCATACACC  693

seq1  TGTACTCAGCCATTCAATTAGACCAACCACTCACCAATGGTCAGTTACTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCAGCCATTCAATTAGACCAACCACTCACCAATGGTCAGTTACTA  743

seq1  ATTATGGGGTAGAAAGACTACGTTTTTCTCATACTATAATACAAGGCATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGGGTAGAAAGACTACGTTTTTCTCATACTATAATACAAGGCATT  793

seq1  ACTCTTAAAAGTATGTAATTTTTCAATTTAATTACTCGGCCCATTTCGGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAAAAGTATGTAATTTTTCAATTTAATTACTCGGCCCATTTCGGT  843

seq1  ATTTGTATCAAAGAAGAGCTTGTATGATCTTCTAAGGCTTTTTTCAAACT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATCAAAGAAGAGCTTGTATGATCTTCTAAGGCTTTTTTCAAACT  893

seq1  TCACAGCAGCTTCCCTTTGGTGAAACTGCTCCCATTTTGTTTGGCTGGTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCAGCTTCCCTTTGGTGAAACTGCTCCCATTTTGTTTGGCTGGTT  943

seq1  GCTTGGCTAGCTAGCTGACTTTTGAGACAAGGTATCAATATGTAGCAGTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCTAGCTAGCTGACTTTTGAGACAAGGTATCAATATGTAGCAGTG  993

seq1  GCTAACCAGGAATTGGCTATTTAGTTTAGGCTGCTCTGGAGCTCAGAAAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACCAGGAATTGGCTATTTAGTTTAGGCTGCTCTGGAGCTCAGAAAC  1043

seq1  CTGCCTGCCTAAAACTCTTTCCTATAAAGGCATGTCCCCACTATGCCCCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCCTAAAACTCTTTCCTATAAAGGCATGTCCCCACTATGCCCCT  1093

seq1  GCTGTTTAGAACATTTTTAGGCAGTAAGTGAAATAGCTCAATGAATTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTAGAACATTTTTAGGCAGTAAGTGAAATAGCTCAATGAATTC  1141