BAC Information

Click to search

BAC

Clone NameB6Ng01-342L19
Chromosome1 (Build37)
Map Location 12,001,380 - 12,002,546
singlet/doubletsinglet
Overlap genenone
Upstream geneC030045D06Rik, A830018L16Rik
Downstream geneLOC665262, LOC100039709, LOC621353, LOC100039733, Sulf1, Slco5a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342L19.bB6Ng01-342L19.g
ACCGA125726GA125727
length1,1921,170
definitionB6Ng01-342L19.b B6Ng01-342L19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctcctgaggaatacagaatggctgagaagcacctgaaaaaatg
cttagcatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcataccagtcagaatggttaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactccttcattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatattactacaggaggatcccgcaatacctctcctgggt
atatatccagaatatgttccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagctattaaaaagaatgaatttatgaaattcctaggtaa
attgttggacctggagggcatcatcctgagtgaggtaacacaatcacaaa
agaactcaaatgatatgtactcactgataagtggatattagcccagaaac
ttagtatacccgagatataagagacaatttgtaaaacacataaaactgaa
aaagaacgaagaccaaagtgtggacactttgccccttcttagaattggaa
acaatcacccatggaatgagttacatagacaaagtttggagctgagacaa
aaggacggaccatctagagactgccatatccagggatccatcccataatt
agcctccaaacaatgacaacatcgcatacactagcaagccttttgctgaa
aggcccctgatatagacgtctcttctgagagtaggccggggccctagcaa
acacagaagtggatgctcacagtcagctattggatggatcacagggctcc
caatggaggattagagaagtaccaaggagctaaagggatctgcaccctgt
agtgcaacaacattatgaactaccagtacttgggagctcttgactctagc
tgcatattatatcaaaagatggctagtcagctatcatgaaagaagagccc
aattggtacagcaaactaatgccaggggatgcaggcaaagtggaatgggt
tgttaaggtactgtacgctataactaaggtgatagcctacac
gaattcttcgggatgatgccaattttgaagtgtcagttttctaacacttt
ggttataacctgagaaattctatctctgttgcaagaaaatacagcacatt
taggggaccaggggttcagaagcatctgaaaagactccatgaactccctc
taggtattcaagcccactcttcataccattccttacctttgaatgaggac
tagacatgcaggctcacatctaatacacagagtacaatgatgatgcacta
cagtttttgagattaggcagtaacagactgacacacactttagctagatt
tgtgggctcatgttgatgaaaagggaagtcataagaagttgagagctatt
ttcaacctctagcatacaataaattgaaatcctaactctcacagcctcaa
aagcccaacatcctcatgagaaggctgggagttgatcctaacctgtagga
tttgccatcaagtgcagatctagccaaagccttatctgcagcctgtgagg
gaaacttgtacagatgaactagctaaacctgaatgacttccatgagatca
ggagatgcaatgcatgaatgctgtcactacaattgttaataagttgtttg
atttttgtcctttgggattttaccttgctgtgtggtccagaatggctcca
aactgataatcttcttggctcagtcttgtgagaagtacatatgtaggttc
agaaaactatgccggcatttgtgggatatctcaaattttacaatagaaaa
ttactctaacaagtgacagaaaaaactggggggatgagtggttgtgttgt
tgttgcttttgtttttgttttctacaaagggttaagttaaaccagaagtg
tggcagtgttattcatgttcttgggatcaggttagaaaacagccctatca
gggcacagcgagacttgaactttaaggacaagatattactagtgatagat
taggaatttttgaatgctagtatcccttggatcagatcgagtgataaaaa
tgagatcattacccaggggtagaaggttacatgtagagaaagatggagtt
gcaacattcatagttaatgatacattagaaattggtttcccattctggaa
aaacaggccatggaaacttagaaattgctagctccctcgaacttacctac
tacggaatgcatcttctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_12001380_12002546
seq2: B6Ng01-342L19.g_67_1236

seq1  GAATTCTTCGGGATGATGCCAATTTTGAAGTGTCAGTTTTCTAACACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCGGGATGATGCCAATTTTGAAGTGTCAGTTTTCTAACACTTT  50

seq1  GGTTATAACCTGAGAAATTCTATCTCTGTTGCAAGAAAATACAGCACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATAACCTGAGAAATTCTATCTCTGTTGCAAGAAAATACAGCACATT  100

seq1  TAGGGGACCAGGGGTTCAGAAGCATCTGAAAAGACTCCATGAACTCCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGACCAGGGGTTCAGAAGCATCTGAAAAGACTCCATGAACTCCCTC  150

seq1  TAGGTATTCAAGCCCACTCTTCATACCATTCCTTACCTTTGAATGAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATTCAAGCCCACTCTTCATACCATTCCTTACCTTTGAATGAGGAC  200

seq1  TAGACATGCAGGCTCACATCTAATACACAGAGTACAATGATGATGCACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATGCAGGCTCACATCTAATACACAGAGTACAATGATGATGCACTA  250

seq1  CAGTTTTTGAGATTAGGCAGTAACAGACTGACACACACTTTAGCTAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTTGAGATTAGGCAGTAACAGACTGACACACACTTTAGCTAGATT  300

seq1  TGTGGGCTCATGTTGATGAAAAGGGAAGTCATAAGAAGTTGAGAGCTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCTCATGTTGATGAAAAGGGAAGTCATAAGAAGTTGAGAGCTATT  350

seq1  TTCAACCTCTAGCATACAATAAATTGAAATCCTAACTCTCACAGCCTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCTCTAGCATACAATAAATTGAAATCCTAACTCTCACAGCCTCAA  400

seq1  AAGCCCAACATCCTCATGAGAAGGCTGGGAGTTGATCCTAACCTGTAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAACATCCTCATGAGAAGGCTGGGAGTTGATCCTAACCTGTAGGA  450

seq1  TTTGCCATCAAGTGCAGATCTAGCCAAAGCCTTATCTGCAGCCTGTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCATCAAGTGCAGATCTAGCCAAAGCCTTATCTGCAGCCTGTGAGG  500

seq1  GAAACTTGTACAGATGAACTAGCTAAACCTGAATGACTTCCATGAGATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTGTACAGATGAACTAGCTAAACCTGAATGACTTCCATGAGATCA  550

seq1  GGAGATGCAATGCATGAATGCTGTCACTACAATTGTTAATAAGTTGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGCAATGCATGAATGCTGTCACTACAATTGTTAATAAGTTGTTTG  600

seq1  ATTTTTGTCCTTTGGGATTTTACCTTGCTGTGTGGTCCAGAATGGCTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTCCTTTGGGATTTTACCTTGCTGTGTGGTCCAGAATGGCTCCA  650

seq1  AACTGATAATCTTCTTGGCTCAGTCTTGTGAGAAGTACATATGTAGGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATAATCTTCTTGGCTCAGTCTTGTGAGAAGTACATATGTAGGTTC  700

seq1  AGAAAACTATGCCGGCATTTGTGGGATATCTCAAATTTTACAATAGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTATGCCGGCATTTGTGGGATATCTCAAATTTTACAATAGAAAA  750

seq1  TTACTCTAACAAGTGACAGAAAAAACT-GGGGGATGAGTGGTTGTGTTGT  799
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTACTCTAACAAGTGACAGAAAAAACTGGGGGGATGAGTGGTTGTGTTGT  800

seq1  TGTTGCTTTTGTTTTTGTTTTCTACAAA-GGTTAAGTTAAACCAGAAGTG  848
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGTTGCTTTTGTTTTTGTTTTCTACAAAGGGTTAAGTTAAACCAGAAGTG  850

seq1  TGGCAGTGTTATTCATGTTCTT-GGATCAGGTTAG-AAACAGCCCTATCA  896
      |||||||||||||||||||||| |||||||||||| ||||||||||||||
seq2  TGGCAGTGTTATTCATGTTCTTGGGATCAGGTTAGAAAACAGCCCTATCA  900

seq1  GGGCACAGCGAGACTTGAACTTAAAGGACAAGATATTACTAGTGATAAGA  946
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  GGGCACAGCGAGACTTGAACTTTAAGGACAAGATATTACTAGTGAT-AGA  949

seq1  TTAGGAATTTTTGAAATGCTAGTAT-CCTTGGATCAGAATCGAGTGATAA  995
      ||||||||||||| ||||||||||| ||||||||||| ||||||||||||
seq2  TTAGGAATTTTTG-AATGCTAGTATCCCTTGGATCAG-ATCGAGTGATAA  997

seq1  AAATGAGATCATTACCCAGGGAAGGAAGG-TACATGTAGAGAAAAGAATG  1044
      |||||||||||||||||||||   ||||| ||||||||||| |||||  |
seq2  AAATGAGATCATTACCCAGGGGTAGAAGGTTACATGTAGAG-AAAGATGG  1046

seq1  AGTTGC-ACATTCATAGTAAAATTAATAACATTTAGAAAT--GGTTCCCA  1091
      |||||| ||||||||||| ||  | || ||| ||||||||  | ||||||
seq2  AGTTGCAACATTCATAGTTAA--TGAT-ACA-TTAGAAATTGGTTTCCCA  1092

seq1  -TCT-GAAAAACA-GCCAT-GAGACTAGAAAATTGCTAAGGCT-CCTCAG  1136
       ||| |||||||| ||||| || |||   |||||||||  ||| ||||  
seq2  TTCTGGAAAAACAGGCCATGGAAACTTAGAAATTGCTA--GCTCCCTCGA  1140

seq1  ACTTCACTCACTTACGG-ATGCATCTTCTCTG  1167
      |||| ||  || ||||| ||||||||||||||
seq2  ACTT-ACCTAC-TACGGAATGCATCTTCTCTG  1170