BAC Information

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BAC

Clone NameB6Ng01-342P13
Chromosome1 (Build37)
Map Location 14,130,452 - 14,131,638
singlet/doubletsinglet
Overlap genenone
Upstream geneNcoa2, LOC665341, LOC100039812, EG621685, Tram1, Lactb2, Xkr9, LOC100039843, EG433273, LOC100039859, LOC100039869
Downstream geneEya1, LOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342P13.bB6Ng01-342P13.g
ACCGA125887GA125888
length1,1681,233
definitionB6Ng01-342P13.b B6Ng01-342P13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaagcagtggccataagtcagtcattgattataggcagatctgt
ttaattccatggtttggcaaatacagaattttttagcttgttccattttt
aagtttaattttatttgaaacaaacttccttgtctcctctgattgtcctg
ctccatgaacttccaggcatacctatatttgctgagagataacaaggctt
cgaggtacacatttccctttctcaccctgtttcttctgcagcttcccagc
tgagtggggcttcctttgcaacttcttggaaatgtgggagtgtttcccag
ggctgtgctgagaattagccacagttggaaaagcactaggagagattttg
atgaaagtctccatgggcctacaacagaatgcaacagaatgtttagaaag
tcatgtagcttggctccactcttcagattggcgaggctctgttctaaagt
gactactgtgcttccattccaatggatcacagtccagtgctggtcacagc
acggaaacagtttgagtgggaagagactggagaagagcctggaggctgct
cacttcagtctctgtgctaacctgggggcaggggacacaccaatatggta
aatagctaaatgaaaagtgagattcaaagaggctgggggcagataaaaga
acagtgactgctctccttttatggcctacttaggattgaactgccccccc
ccttttctctcagccttgtttatagatgttaaatgacagtgaggaccctt
ttatttttaaaaaaggttcttaatggagaattcatttgatcatggttgag
aggtgattaaagttaggtcaaacccttgtgatctcaagtcattttaatta
agatcctaacatttgtcccacaatgtggagtgtcagagaatggtgttttc
tttagaacacttaatacgtcatattaacaataccttacattcaatgatat
ttggactctgcatgtcattattattgagctatagatacctcactgtgccc
tagcaggtcataaacccatattttatcccatatttacagataaagcaatt
actcagtatgaaatgcggatgaggtaaccccttggactttctgtcttatg
tgtagctggaattgatgcaattccacgtggtacgaatgaccatcactccc
tagactagttggctgatt
gaattcactccctagactgtagactctgtagattgagttcaaggtcagat
cttgaactcatagagatctgcctgcctctgccttgctagtgctgggatta
aagcatcactcaactagagactggatactttaaagagactgaaattttaa
tgtgtttgaatttgtaaagactgaaggacttttaaagttatctatgtttt
ttaatgtgagatcttggggatgaataagaaaggaaaggtgtggctcaata
gtgatgtgcttggatatcaagttaacacagtgtcagttgtactggctagt
cttatgccagcctgacgaacaagaattatctgaaagaagggcatcttaat
taagaaaatgcctccataagttctgactgtaaggcatgttcttaattaat
gattgactggggaggccccagtctattgtagttgggcaggtagtactggg
ttctataagaaagcaggcagagcaagctatggaaagcgaggcagtaaaca
gcacacacacacacacacacacacacacacacgcacgcacacacacatac
acatacacacacacacacacacacacacacacacggtctctgctgttttc
ataagctcctgcctctaggttcctgcctgcttgagttcctgtcctgactt
cattcaatgacgaacagcaatatgaaagtataaaccatataaacccgttc
ctccccaactggcttttttggtcatggcgtttttgatgctgcactagaca
cactaactaagaaggactgtagatctgtcgattgatctgtctgtctgtct
gactatctgtctgcctgcctgcctgcttgcctgtccatccgtccatccat
ccaatacatccatccatccatcccatacatccatccatccatgccatcca
actatgcatcgaatctatcagatctagcaatctaatctaatctatgcaat
cccaactacctaggctatcctatctagtttgggtaggagaagggataact
agctttataggtgaggttaggaagtggctggctttggacttcttttctca
atgcgagacgatatttaataacataggttaagggactgaatgggcctcca
tatgaggaggtctatataaaaatcggtgatgaaaattcatctcgatcata
tcttttacacgcaatggaaaggattttatataccaagtcaactctcctcg
agcgtgggtagggaacactgtatatcgaagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_14130452_14131638
seq2: B6Ng01-342P13.b_45_1212 (reverse)

seq1  AATCAGCCAACTAGACTCTAGTGAGTTTGATTTGTTTCTTTTTCCCTACA  50
      ||||||||||||||  ||||| |||  |||  || |  ||  | |   ||
seq2  AATCAGCCAACTAG--TCTAGGGAG--TGA--TGGTCATTCGTAC---CA  41

seq1  CGTGGATTTTCCATTTCAATCCAGGCTACCACTAAGACAGAAAGTCC-AG  99
      |||||| || |    ||||| |  |||||   ||||||||||||||| ||
seq2  CGTGGAATTGC---ATCAATTCCAGCTACACATAAGACAGAAAGTCCAAG  88

seq1  GGGTTACTTTCATCTGCCTTTTCATACTGAGTTTATTGCTTTATCTGT-A  148
      |||||||  ||||| | | |||||||||||| | |||||||||||||| |
seq2  GGGTTAC-CTCATCCG-CATTTCATACTGAG-TAATTGCTTTATCTGTAA  135

seq1  ATATGGGGATTAAAATATTGGGTTTATGACCTTGCTAGGGCACAGTGA-G  197
      |||||||   ||||||| ||||||||||||| |||||||||||||||| |
seq2  ATATGGG--ATAAAATA-TGGGTTTATGACC-TGCTAGGGCACAGTGAGG  181

seq1  TATCTAATAGCTC-ATAATATGAACATGCAGAGTTCCAAATATCATTGAA  246
      ||||| ||||||| ||||||   |||||||||| ||||||||||||||||
seq2  TATCT-ATAGCTCAATAATAATGACATGCAGAG-TCCAAATATCATTGAA  229

seq1  TGTAAGGTATTGTTAATATGACGTTATTAAGTGTTCTAAAGAAAACACCA  296
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGTAAGGTATTGTTAATATGACG-TATTAAGTGTTCTAAAGAAAACACCA  278

seq1  TTCTCTGACACTCCACATTTGTGGGACAAATGTTAGGATCTTTAATTAAA  346
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  TTCTCTGACACTCCACA-TTGTGGGACAAATGTTAGGATC-TTAATTAAA  326

seq1  ATGACTTTGAGATCACAA-GGTTTGACCTAACTTTAATCACCTCTCAACC  395
      ||||| |||||||||||| |||||||||||||||||||||||||||||||
seq2  ATGAC-TTGAGATCACAAGGGTTTGACCTAACTTTAATCACCTCTCAACC  375

seq1  ATGATCAAATGAATTCTCCATTAAGAACC-TTTTTAAAAATAAAAGGGTC  444
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGATCAAATGAATTCTCCATTAAGAACCTTTTTTAAAAATAAAAGGGTC  425

seq1  CTCACTGTCATTTAACATCTATAAACAAGGCTGAGAGAAAAGGGGGGGGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGTCATTTAACATCTATAAACAAGGCTGAGAGAAAAGGGGGGGGG  475

seq1  CAGTTCAATCCTAAGTAGGCCATAAAAGGAGAGCAGTCACTGTTCTTTTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAATCCTAAGTAGGCCATAAAAGGAGAGCAGTCACTGTTCTTTTA  525

seq1  TCTGCCCCCAGCCTCTTTGAATCTCACTTTTCATTTAGCTATTTACCATA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCCCAGCCTCTTTGAATCTCACTTTTCATTTAGCTATTTACCATA  575

seq1  TTGGTGTGTCCCCTGCCCCCAGGTTAGCACAGAGACTGAAGTGAGCAGCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTGTCCCCTGCCCCCAGGTTAGCACAGAGACTGAAGTGAGCAGCC  625

seq1  TCCAGGCTCTTCTCCAGTCTCTTCCCACTCAAACTGTTTCCGTGCTGTGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCTCTTCTCCAGTCTCTTCCCACTCAAACTGTTTCCGTGCTGTGA  675

seq1  CCAGCACTGGACTGTGATCCATTGGAATGGAAGCACAGTAGTCACTTTAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTGGACTGTGATCCATTGGAATGGAAGCACAGTAGTCACTTTAG  725

seq1  AACAGAGCCTCGCCAATCTGAAGAGTGGAGCCAAGCTACATGACTTTCTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGCCTCGCCAATCTGAAGAGTGGAGCCAAGCTACATGACTTTCTA  775

seq1  AACATTCTGTTGCATTCTGTTGTAGGCCCATGGAGACTTTCATCAAAATC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCTGTTGCATTCTGTTGTAGGCCCATGGAGACTTTCATCAAAATC  825

seq1  TCTCCTAGTGCTTTTCCAACTGTGGCTAATTCTCAGCACAGCCCTGGGAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAGTGCTTTTCCAACTGTGGCTAATTCTCAGCACAGCCCTGGGAA  875

seq1  ACACTCCCACATTTCCAAGAAGTTGCAAAGGAAGCCCCACTCAGCTGGGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCCACATTTCCAAGAAGTTGCAAAGGAAGCCCCACTCAGCTGGGA  925

seq1  AGCTGCAGAAGAAACAGGGTGAGAAAGGGAAATGTGTACCTCGAAGCCTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAGAAGAAACAGGGTGAGAAAGGGAAATGTGTACCTCGAAGCCTT  975

seq1  GTTATCTCTCAGCAAATATAGGTATGCCTGGAAGTTCATGGAGCAGGACA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTCTCAGCAAATATAGGTATGCCTGGAAGTTCATGGAGCAGGACA  1025

seq1  ATCAGAGGAGACAAGGAAGTTTGTTTCAAATAAAATTAAACTTAAAAATG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGGAGACAAGGAAGTTTGTTTCAAATAAAATTAAACTTAAAAATG  1075

seq1  GAACAAGCTAAAAAATTCTGTATTTGCCAAACCATGGAATTAAACAGATC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGCTAAAAAATTCTGTATTTGCCAAACCATGGAATTAAACAGATC  1125

seq1  TGCCTATAATCAATGACTGACTTATGGCCACTGCTTGGAATTC  1187
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATAATCAATGACTGACTTATGGCCACTGCTTGGAATTC  1168