BAC Information

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BAC

Clone NameB6Ng01-345B22
Chromosome1 (Build37)
Map Location 71,539,143 - 71,690,306
singlet/doubletdoublet
Overlap geneLOC629101, Atic, Fn1
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12
Downstream geneLOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345B22.bB6Ng01-345B22.g
ACCGA127422GA127423
length1,139685
definitionB6Ng01-345B22.b B6Ng01-345B22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,539,143 - 71,540,285)(71,689,625 - 71,690,306)
sequence
gaattcagtcacaggttaatgagtgattagtgcagaagtctgagcctgga
agaaatcattgatttttctccttcagaaagacatatgtctgcattcttgt
taatttataggagtcttattctgtgattttaactctttcctgaggaaaaa
aatagtgggcttcaaatattattaaggcatattcttaaagcataaagtca
ttaagtttggactttgggccaagaagttgattgccaacaccaagaaaata
tgaccagctcagtataaacttgagatcttaagaaatcattttttttattt
cagttgtatttgataaattcccagttgaattcacgttccttcctaacata
cattcatataaatttgaggtctcttttctgaaaatacaccaaaattactc
atgcttgcctgtaactttgtaaactactgatgagagaacactaacaaaca
cataccaatatttaagcacacttactttaaaaagaaaaaaaaaaaagcaa
agtggctcaaacaagaacaaagctcaggaaagtagacaaaaaccaagtaa
gactgaagatgataactttatccatctgctgctcccatctgttgttattt
ttgttccccttttagacagggtgtcactgtccagcccaggacgacctgct
ggagtcccaggcccatcagcacatccagcgtctcctctctcaaataccct
caatacctcagtgtgtctgagcttaaactctgccagtgttaactggaagg
ctgtggtgaatggagatattgtcacaatgagagtctagagtagagagtac
acggcaagcaaacggacactgggtgctggtcacgcacacgttccacttag
accagacgacccaggcttgccgtcactcttactttactgggttttctttt
gttccatatttgcttgttccactgttttgtaattgcggcaaggtcagagg
tttagttagtctaagaatgcttagccacacctcgaactatctgactcaaa
tgttttatcctctgaacaatatgcctaattcactaccattattttaaaga
tataacaagtagtcagctgaaaaagagagaggtggggtatgggctagaac
ctgccacgccttggcacagccctgatgagttgagctgct
gaattctgctgagcaccgacacccaggaagagggataacttaggaaatcc
gtagctctccagggtgtcctcctgagagccaagttttagagaaggcagga
tatcccctgtgggtcttcaggggtctctcaggaagaggaaaggccacaca
cagagcatatgagagctatgagggaagacaggcaaggcagaccatttcag
atgagtggggagccatagggagaaggcaggagcatggtacccaggaatga
tgagcagctcagtgggttgaagcttagaacagggcagggaaggctagcag
ccaggcgggaggggagagtggtagaggggtgtggagctcacagatggatc
gcttcctagcgtgactgaaggtttgtgaaagataacctgttgtgttgtgc
ggcaggataatgttgtcgcttagatgtgctgttcaggtgtggctccgatg
aggattatatgaggagtcttgtgaaccacttcttgggctgagtgcggaag
ttccgggtcaagccaagaagactctggactcattgacttctcccttccag
ttttataacttttttcattctccctgcccttaggatctggctcctttcac
tgatgtccgaactgctatttaccaaccgcagactcacccccagcccgctc
cctacggccactgtgtcaccgactgtggtgtggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_71539143_71540285
seq2: B6Ng01-345B22.b_45_1183

seq1  GAATTCAGTCACAGGTTAATGAGTGATTAGTGCAGAAGTCTGAGCCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCACAGGTTAATGAGTGATTAGTGCAGAAGTCTGAGCCTGGA  50

seq1  AGAAATCATTGATTTTTCTCCTTCAGAAAGACATATGTCTGCATTCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCATTGATTTTTCTCCTTCAGAAAGACATATGTCTGCATTCTTGT  100

seq1  TAATTTATAGGAGTCTTATTCTGTGATTTTAACTCTTTCCTGAGGAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTATAGGAGTCTTATTCTGTGATTTTAACTCTTTCCTGAGGAAAAA  150

seq1  AATAGTGGGCTTCAAATATTATTAAGGCATATTCTTAAAGCATAAAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGGGCTTCAAATATTATTAAGGCATATTCTTAAAGCATAAAGTCA  200

seq1  TTAAGTTTGGACTTTGGGCCAAGAAGTTGATTGCCAACACCAAGAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTGGACTTTGGGCCAAGAAGTTGATTGCCAACACCAAGAAAATA  250

seq1  TGACCAGCTCAGTATAAACTTGAGATCTTAAGAAATCATTTTTTTTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGCTCAGTATAAACTTGAGATCTTAAGAAATCATTTTTTTTATTT  300

seq1  CAGTTGTATTTGATAAATTCCCAGTTGAATTCACGTTCCTTCCTAACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTATTTGATAAATTCCCAGTTGAATTCACGTTCCTTCCTAACATA  350

seq1  CATTCATATAAATTTGAGGTCTCTTTTCTGAAAATACACCAAAATTACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATATAAATTTGAGGTCTCTTTTCTGAAAATACACCAAAATTACTC  400

seq1  ATGCTTGCCTGTAACTTTGTAAACTACTGATGAGAGAACACTAACAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGCCTGTAACTTTGTAAACTACTGATGAGAGAACACTAACAAACA  450

seq1  CATACCAATATTTAAGCACACTTACTTTAAAAAGAAAAAAAAAAAAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCAATATTTAAGCACACTTACTTTAAAAAGAAAAAAAAAAAAGCAA  500

seq1  AGTGGCTCAAACAAGAACAAAGCTCAGGAAAGTAGACAAAAACCAAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTCAAACAAGAACAAAGCTCAGGAAAGTAGACAAAAACCAAGTAA  550

seq1  GACTGAAGATGATAACTTTATCCATCTGCTGCTCCCATCTGTTGTTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAGATGATAACTTTATCCATCTGCTGCTCCCATCTGTTGTTATTT  600

seq1  TTGTTCCCCTTTTAGACAGGGTGTCACTGTCCAGCCCAGGACGACCTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCCCTTTTAGACAGGGTGTCACTGTCCAGCCCAGGACGACCTGCT  650

seq1  GGAGTCCCAGGCCCATCAGCACATCCAGCGTCTCCTCTCTCAAATACCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCCCAGGCCCATCAGCACATCCAGCGTCTCCTCTCTCAAATACCCT  700

seq1  CAATACCTCAGTGTGTCTGAGCTTAAACTCTGCCAGTGTTAACTGGAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACCTCAGTGTGTCTGAGCTTAAACTCTGCCAGTGTTAACTGGAAGG  750

seq1  CTGTGGTGAATGGAGATATTGTCACAATGAGAGTCTAGAGTAGAGAGTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTGAATGGAGATATTGTCACAATGAGAGTCTAGAGTAGAGAGTAC  800

seq1  ACGGCAAGCAAACGGACACTGGGTGCTGGTCACGCACACGTTCCACTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCAAGCAAACGGACACTGGGTGCTGGTCACGCACACGTTCCACTTAG  850

seq1  ACCAGACGACCCAGGCTTGCCGTCACTCTTACTTTACTGGGTTTTCTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACGACCCAGGCTTGCCGTCACTCTTACTTTACTGGGTTTTCTTTT  900

seq1  GTTCCATATTTGCTTGTTCCACTGTTTTGTAATTGCGGCAAGGTCAGAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATATTTGCTTGTTCCACTGTTTTGTAATTGCGGCAAGGTCAGAGG  950

seq1  TTTAGTTAGTCTAAGAATGCTTAGCCACACCTCGAACTATCTGACTCAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTAGTCTAAGAATGCTTAGCCACACCTCGAACTATCTGACTCAAA  1000

seq1  TGTTTTTATCCTTCTGAAC-ATATGCCTAATTTCCACCTACAATTATTTT  1049
      || |||||||| ||||||| ||||||||||||  || |||| |||| |||
seq2  TG-TTTTATCC-TCTGAACAATATGCCTAATT--CA-CTACCATTA-TTT  1044

seq1  TAAAGATAT-ACAGTAAGTCAGCTGAAA---AGAGAGGTGGGGTATGGGG  1095
      ||||||||| |||   ||||||||||||   ||||||||||||||| |||
seq2  TAAAGATATAACAAGTAGTCAGCTGAAAAAGAGAGAGGTGGGGTAT-GGG  1093

seq1  CTAAGGACTGCCACCACCCTTGGGCACAGCACTGATGAG-TGAGCTGCT  1143
      |||    |||||||   |||| |||||||| |||||||| |||||||||
seq2  CTAGAACCTGCCAC--GCCTT-GGCACAGCCCTGATGAGTTGAGCTGCT  1139

seq1: chr1_71689625_71690306
seq2: B6Ng01-345B22.g_65_749 (reverse)

seq1  GACCACACCACTGTCGGTGACACAGTGGCCGTAGGGAGCGGGCTGGGGGT  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GACCACACCACAGTCGGTGACACAGTGGCCGTAGGGAGCGGGCTGGGGGT  50

seq1  GAGTCTGCGGTTGGTAAATAGCTGTTCGGACATCAGTG-AAGGAGCCAGA  99
      |||||||||||||||||||||| ||||||||||||||| |||||||||||
seq2  GAGTCTGCGGTTGGTAAATAGCAGTTCGGACATCAGTGAAAGGAGCCAGA  100

seq1  TCCTAAGGGCA-GGAGAATG-AAAAAGTTATAAAACTGGAAGGGAGAAGT  147
      ||||||||||| |||||||| |||||||||||||||||||||||||||||
seq2  TCCTAAGGGCAGGGAGAATGAAAAAAGTTATAAAACTGGAAGGGAGAAGT  150

seq1  CAATGAGTCCAGAGTCTTCTTGGCTTGACCCGGAACTTCCGCACTCAGCC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGTCCAGAGTCTTCTTGGCTTGACCCGGAACTTCCGCACTCAGCC  200

seq1  CAAGAAGTGGTTCACAAGACTCCTCATATAATCCTCATCGGAGCCACACC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGTGGTTCACAAGACTCCTCATATAATCCTCATCGGAGCCACACC  250

seq1  TGAACAGCACATCTAAGCGACAACATTATCCTGCCGCACAACACAACAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGCACATCTAAGCGACAACATTATCCTGCCGCACAACACAACAGG  300

seq1  TTATCTTTCACAAACCTTCAGTCACGCTAGGAAGCGATCCATCTGTGAGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTCACAAACCTTCAGTCACGCTAGGAAGCGATCCATCTGTGAGC  350

seq1  TCCACACCCCTCTACCACTCTCCCCTCCCGCCTGGCTGCTAGCCTTCCCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACCCCTCTACCACTCTCCCCTCCCGCCTGGCTGCTAGCCTTCCCT  400

seq1  GCCCTGTTCTAAGCTTCAACCCACTGAGCTGCTCATCATTCCTGGGTACC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTTCTAAGCTTCAACCCACTGAGCTGCTCATCATTCCTGGGTACC  450

seq1  ATGCTCCTGCCTTCTCCCTATGGCTCCCCACTCATCTGAAATGGTCTGCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCTGCCTTCTCCCTATGGCTCCCCACTCATCTGAAATGGTCTGCC  500

seq1  TTGCCTGTCTTCCCTCATAGCTCTCATATGCTCTGTGTGTGGCCTTTCCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGTCTTCCCTCATAGCTCTCATATGCTCTGTGTGTGGCCTTTCCT  550

seq1  CTTCCTGAGAGACCCCTGAAGACCCACAGGGGATATCCTGCCTTCTCTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGAGAGACCCCTGAAGACCCACAGGGGATATCCTGCCTTCTCTAA  600

seq1  AACTTGGCTCTCAGGAGGACACCCTGGAGAGCTACGGATTTCCTAAGTTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGCTCTCAGGAGGACACCCTGGAGAGCTACGGATTTCCTAAGTTA  650

seq1  TCCCTCTTCCTGGGTGTCGGTGCTCAGCAGAATTC  682
      |||||||||||||||||||||||||||||||||||
seq2  TCCCTCTTCCTGGGTGTCGGTGCTCAGCAGAATTC  685