BAC Information

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BAC

Clone NameB6Ng01-345J05
Chromosome1 (Build37)
Map Location 166,617,118 - 166,740,701
singlet/doubletdoublet
Overlap geneDpt
Upstream geneGm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065
Downstream geneXcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345J05.bB6Ng01-345J05.g
ACCGA127726GA127727
length1,0881,067
definitionB6Ng01-345J05.b B6Ng01-345J05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,617,118 - 166,618,214)(166,739,629 - 166,740,701)
sequence
gaattcagccgctggaagtgaagattgagtctcttcataagtgttgacaa
aggagtgcagcgtccttgggaagtagagcttgttggacaatgggctgagg
cattctaggagactttccttgagcttcacagagagcatggccacctcctc
atcaactgcacaccgccgtgtgagagtgctttagagataagtcccaattg
acatagagcatgaatgtgtgaggcgatcaactattctgaaaaatctgttc
ttctttttcatattcatctttatcattttttctactcattccatctcctc
atcaccaagttcaagtcaaagaaaaacaggccaagaatgcaaatgagtca
gatatatcatgtatgtcaaggcactgtagagtagacaggaggtactttgc
tgttatcccattatgacctgttagccttctggggatcttagcacatgcct
ctgaagaagatcatcttttatcccatagcaagggtaccgaggaggttagt
aaaactgttcacaagggtaaatttaacatctcaagggacctgagagtgct
gtgtgactattcatcaagaggaagcatgagaaaggaatttttgagtagtc
agctgatttgacagcttattaattccaaagtgaaagggttgtgtccaact
gatggatctggccaacaagaattttccaataagaaaggagtttaatatgt
aacttcagactttatagagggcaagcctgggtttctacagtacaccagca
attcttttcctattttgagaatgaggagagttccaggtaggggtggggca
aggtcaggtgcccagacttcctggcactttagcacattgagaggagataa
gatggtggaaaatagcctggttcaaaggagacctggaaagctttctgtct
acttttaaccctaagagaaaaatctatcaaaatcagtgttttagaaagca
actattgatcacttatatgtaaagatcaatgctagagctgttggattcaa
aaatgaaaaatacatgttttttgactaaaaaatgtataagcgatcagatg
atacatctaataacatgaatatactgtagtgatgctaa
gaattctcttcctattaatgaaccacttatgactgggactatggtacagc
cctagaaagaacacttgcctagaatgacggattcctggtaacgcaagaaa
acaagaaacttcagcctagtctgtctgtctgtctgtctgtctgtctgtct
gtctctctgtcatgcatatgggtgcacacacagacatataagacccaaac
actgtgctagacaatcattggttatgcaaagatcaatgagttttcctata
ccaggtattcaaagtctgggtagaaagaggtatccatacacagaatgtaa
tagtgtgttgttctcatccttacagactgcaaactgcagttttcatcaga
ctttttttatggaaacacagtaaataaaccttgccatcatttccaatgat
gcattgaggttttcagagaagtaaaggtgcctttccagggacgttataga
ggggacaacgaggaaagaggtcacagtaaaaaatggcacggagcctgaga
ttcaggatgcccttgcctgtaccagcattccttgggcccaacatagcatg
cagatctttggtctttgattctggatctgcttggtctcaatcatcagccc
ttggtgtacctgctcaccagtcatggtagggtaagaagcagttttggtga
agctagaggaggtttttttctggcatgtagcttcagacttcagctgactt
tgagctgtgaatttactgtcactgctgcaagaagaactattggactctag
agactttgtgcaccactggcacatctgtggagtaacaccatgattacaga
gaacagaaactgcaaggctctcctcccaaacatcagactatggagagacg
aagcccttgaatgagccaagcttcaaatgttgattttggataactatcca
aggcttaaaagcctgggttgtttggaggccaaagaattgggaataagttg
tgcggtaactggtgtgagttatcaggtgactaaatgtgtgtgtgtcatct
catagaagattgggaagcagagtcaggagcactgggcttcattccaggag
agacgagatagggacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_166617118_166618214
seq2: B6Ng01-345J05.b_46_1133

seq1  GAATTCAGCCGCTGGAAGTGAAGATTGAGTCTCTTCATAAGTGTTGACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCGCTGGAAGTGAAGATTGAGTCTCTTCATAAGTGTTGACAA  50

seq1  AGGAGTGCAGCGTCCTTGGGAAGTAGAGCTTGTTGGACAATGGGCTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGCAGCGTCCTTGGGAAGTAGAGCTTGTTGGACAATGGGCTGAGG  100

seq1  CATTCTAGGAGACTTTCCTTGAGCTTCACAGAGAGCATGGCCACCTCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAGGAGACTTTCCTTGAGCTTCACAGAGAGCATGGCCACCTCCTC  150

seq1  ATCAACTGCACACCGCCGTGTGAGAGTGCTTTAGAGATAAGTCCCAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTGCACACCGCCGTGTGAGAGTGCTTTAGAGATAAGTCCCAATTG  200

seq1  ACATAGAGCATGAATGTGTGAGGCGATCAACTATTCTGAAAAATCTGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAGCATGAATGTGTGAGGCGATCAACTATTCTGAAAAATCTGTTC  250

seq1  TTCTTTTTCATATTCATCTTTATCATTTTTTCTACTCATTCCATCTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTCATATTCATCTTTATCATTTTTTCTACTCATTCCATCTCCTC  300

seq1  ATCACCAAGTTCAAGTCAAAGAAAAACAGGCCAAGAATGCAAATGAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAAGTTCAAGTCAAAGAAAAACAGGCCAAGAATGCAAATGAGTCA  350

seq1  GATATATCATGTATGTCAAGGCACTGTAGAGTAGACAGGAGGTACTTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATCATGTATGTCAAGGCACTGTAGAGTAGACAGGAGGTACTTTGC  400

seq1  TGTTATCCCATTATGACCTGTTAGCCTTCTGGGGATCTTAGCACATGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCCCATTATGACCTGTTAGCCTTCTGGGGATCTTAGCACATGCCT  450

seq1  CTGAAGAAGATCATCTTTTATCCCATAGCAAGGGTACCGAGGAGGTTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAAGATCATCTTTTATCCCATAGCAAGGGTACCGAGGAGGTTAGT  500

seq1  AAAACTGTTCACAAGGGTAAATTTAACATCTCAAGGGACCTGAGAGTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTTCACAAGGGTAAATTTAACATCTCAAGGGACCTGAGAGTGCT  550

seq1  GTGTGACTATTCATCAAGAGGAAGCATGAGAAAGGAATTTTTGAGTAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACTATTCATCAAGAGGAAGCATGAGAAAGGAATTTTTGAGTAGTC  600

seq1  AGCTGATTTGACAGCTTATTAATTCCAAAGTGAAAGGGTTGTGTCCAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATTTGACAGCTTATTAATTCCAAAGTGAAAGGGTTGTGTCCAACT  650

seq1  GATGGATCTGGCCAACAAGAATTTTCCAATAAGAAAGGAGTTTAATATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATCTGGCCAACAAGAATTTTCCAATAAGAAAGGAGTTTAATATGT  700

seq1  AACTTCAGACTTTATAGAGGGCAAGCCTGGGTTTCTACAGTACACCAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAGACTTTATAGAGGGCAAGCCTGGGTTTCTACAGTACACCAGCA  750

seq1  ATTCTTTTCCTATTTTGAGAATGAGGAGAGTTCCAGGTAGGGGTGGGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTCCTATTTTGAGAATGAGGAGAGTTCCAGGTAGGGGTGGGGCA  800

seq1  AGGTCAGGTGCCCAGACTTCCTGGCACTTTAGCACATTGAGAGGAGATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGGTGCCCAGACTTCCTGGCACTTTAGCACATTGAGAGGAGATAA  850

seq1  GATGGTGGAAAATAGCCTGGTTCAAAGGAGACCTGG-AAGCTTTCTGTCT  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GATGGTGGAAAATAGCCTGGTTCAAAGGAGACCTGGAAAGCTTTCTGTCT  900

seq1  ACTTTTAACCCTAAGAGAAAAATCTATCAAAATCAGTGTTTTAGAAAGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAACCCTAAGAGAAAAATCTATCAAAATCAGTGTTTTAGAAAGCA  950

seq1  ACTATTGATCACTTATATGTAAAGATCAATGCTAGAGCTGTTGGGAATTC  999
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  ACTATTGATCACTTATATGTAAAGATCAATGCTAGAGCTGTTGG--ATTC  998

seq1  AAAAATGAAAAATACATGTTTTTTGAACTAAAAAATGTATAAAGCGATCA  1049
      ||||||||||||||||||||||||| |||||||||||||| |||||||||
seq2  AAAAATGAAAAATACATGTTTTTTG-ACTAAAAAATGTAT-AAGCGATCA  1046

seq1  GAATGAATAACATCTAAATAACATTGATATAACTGTAGTGATTGCTAA  1097
      | ||||   |||||| ||||||||  |||| |||||||||| ||||||
seq2  G-ATGA--TACATCT-AATAACATGAATAT-ACTGTAGTGA-TGCTAA  1088

seq1: chr1_166739629_166740701
seq2: B6Ng01-345J05.g_66_1132 (reverse)

seq1  ATGTCCTATTTCTCTGTCTCTCCCTGGGATGAAGCCCAGTGCTCCCTGAC  50
      ||||||  | |||| |||||| ||||| ||||||||||||||| ||||||
seq2  ATGTCC-CTATCTC-GTCTCT-CCTGGAATGAAGCCCAGTGCT-CCTGAC  46

seq1  TCTGGCTTCCAATCTTCTATGAGATGACACACACACATTTAGTCACCCTG  100
      ||||  | ||||||||||||||||||||||||||||||||||||| ||||
seq2  TCTGCTTCCCAATCTTCTATGAGATGACACACACACATTTAGTCA-CCTG  95

seq1  ATAACTCACACCAGTTAACCGCACAACTTATCCCAAATTCTTTGGCCTCC  150
      |||||||||||||||| |||||||||||||| || |||||||||||||||
seq2  ATAACTCACACCAGTT-ACCGCACAACTTATTCCCAATTCTTTGGCCTCC  144

seq1  AAACAACCCAGGCTTTTAAGCCTTGGATAGTTATCCAAAATCAACATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACCCAGGCTTTTAAGCCTTGGATAGTTATCCAAAATCAACATTTG  194

seq1  AAGCTTGGCTCATTCAAGGGCTTCGTCTCTCCATAGTCTGATGTTTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGGCTCATTCAAGGGCTTCGTCTCTCCATAGTCTGATGTTTGGGA  244

seq1  GGAGAGCCTTGCAGTTTCTGTTCTCTGTAATCATGGTGTTACTCCACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCCTTGCAGTTTCTGTTCTCTGTAATCATGGTGTTACTCCACAGA  294

seq1  TGTGCCAGTGGTGCACAAAGTCTCTAGAGTCCAATAGTTCTTCTTGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCAGTGGTGCACAAAGTCTCTAGAGTCCAATAGTTCTTCTTGCAGC  344

seq1  AGTGACAGTAAATTCACAGCTCAAAGTCAGCTGAAGTCTGAAGCTACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAGTAAATTCACAGCTCAAAGTCAGCTGAAGTCTGAAGCTACATG  394

seq1  CCAGAAAAAAACCTCCTCTAGCTTCACCAAAACTGCTTCTTACCCTACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAAAAACCTCCTCTAGCTTCACCAAAACTGCTTCTTACCCTACCA  444

seq1  TGACTGGTGAGCAGGTACACCAAGGGCTGATGATTGAGACCAAGCAGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGTGAGCAGGTACACCAAGGGCTGATGATTGAGACCAAGCAGATC  494

seq1  CAGAATCAAAGACCAAAGATCTGCATGCTATGTTGGGCCCAAGGAATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCAAAGACCAAAGATCTGCATGCTATGTTGGGCCCAAGGAATGCT  544

seq1  GGTACAGGCAAGGGCATCCTGAATCTCAGGCTCCGTGCCATTTTTTACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAGGCAAGGGCATCCTGAATCTCAGGCTCCGTGCCATTTTTTACTG  594

seq1  TGACCTCTTTCCTCGTTGTCCCCTCTATAACGTCCCTGGAAAGGCACCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCTTTCCTCGTTGTCCCCTCTATAACGTCCCTGGAAAGGCACCTT  644

seq1  TACTTCTCTGAAAACCTCAATGCATCATTGGAAATGATGGCAAGGTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTCTGAAAACCTCAATGCATCATTGGAAATGATGGCAAGGTTTAT  694

seq1  TTACTGTGTTTCCATAAAAAAAGTCTGATGAAAACTGCAGTTTGCAGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTGTTTCCATAAAAAAAGTCTGATGAAAACTGCAGTTTGCAGTCT  744

seq1  GTAAGGATGAGAACAACACACTATTACATTCTGTGTATGGATACCTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGATGAGAACAACACACTATTACATTCTGTGTATGGATACCTCTTT  794

seq1  CTACCCAGACTTTGAATACCTGGTATAGGAAAACTCATTGATCTTTGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCAGACTTTGAATACCTGGTATAGGAAAACTCATTGATCTTTGCAT  844

seq1  AACCAATGATTGTCTAGCACAGTGTTTGGGTCTTATATGTCTGTGTGTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATGATTGTCTAGCACAGTGTTTGGGTCTTATATGTCTGTGTGTGC  894

seq1  ACCCATATGCATGACAGAGAGACAGACAGACAGACAGACAGACAGACAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATATGCATGACAGAGAGACAGACAGACAGACAGACAGACAGACAGA  944

seq1  CAGACTAGGCTGAAGTTTCTTGTTTTCTTGCGTTACCAGGAATCCGTCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTAGGCTGAAGTTTCTTGTTTTCTTGCGTTACCAGGAATCCGTCAT  994

seq1  TCTAGGCAAGTGTTCTTTCTAGGGCTGTACCATAGTCCCAGTCATAAGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCAAGTGTTCTTTCTAGGGCTGTACCATAGTCCCAGTCATAAGTG  1044

seq1  GTTCATTAATAGGAAGAGAATTC  1073
      |||||||||||||||||||||||
seq2  GTTCATTAATAGGAAGAGAATTC  1067