BAC Information

Click to search

BAC

Clone NameB6Ng01-346E20
Chromosome1 (Build37)
Map Location 17,341,818 - 17,342,989
singlet/doubletsinglet
Overlap genenone
Upstream geneStau2, Ube2w, Tceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306, Jph1, Gdap1
Downstream geneLOC383495, Rbm6-ps1, Ppia-ps1_125.1, Pi15, Crispld1, LOC665564, LOC100040126, Crisp4, EG574082, EG654460, Defb17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346E20.bB6Ng01-346E20.g
ACCGA128238GA128239
length1,1631,201
definitionB6Ng01-346E20.b B6Ng01-346E20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctccatgatgatggtcatgaactctaaccctctggaaccatgagc
tccaaataaatactttcttttatatcttcccttatttatgatatattatc
acagcaaaagcaataaggacagtaaataatcatttattttgattttatag
gaaaagttttcctgagtcagaaagcttaccatcctatagtatatatacaa
taagatagatggtgaaggtatacagttttattcattaatttaactcatgt
ataaatttgaatgagtatatagtgctagttttctgaaactattatccaca
ctgttaattggttttgaattatatagatttttatgagatatataatttta
aaatcatatgaattttattatatagctttttcgcagatagcattgctatt
ttaagttcaaattaatgaaaatcaaaatgtttgcaacctatcctgattat
tttgccccactcttgcatactaaactgaaggtacttagtctctgcaacat
tatatgatattcccacagcaacagacacataatgatgttaaatggattgg
gagaatccaaacaaatgcaattggtatagtcatttgttgtttccagtcaa
ctgagagatttctaaggatttggtgccacctggcctgatactcaacttgt
gacctactcatcaacagtgacatccctttgatcttcagattcaaacaact
gtttgttcatcatgagacttgtcttcccacatagtccagttgtgacaaga
actttccaaacttttgctatcaaacacaagcttcgatgttgagaaattag
ccctagggctggagagatggctcagccgttaaaggctaggctcacaacca
aaaatataagagaaattagcccaactgagtcactctcaaactagattgta
ctttagaatcacctaggaaacaattcataacgtacatataaccaggttct
agtccagattagtgatttaaaattctggggaaatgaagactggtcatcac
agtttataatttctaagaaacctcagcccagttacaagaactactggggc
cctaattctatatttccatgtagataatagatgataccttgtttagttta
acaggtttagttgtcacatcaaagagaatccacagaaagcctatgtccat
ttaaactgcaaca
gaattctagggctaaggaaaaaacttgcttccgtgggattccttaacttt
tcttatggtaaactgtatctggctaagactgtcctttcttatcttagtaa
acaactaaccgataagcctggagctgcaggctctgactgtataatgctaa
ttagtagtgagtaggtaactttctagtggaattttaagtagggcgttgga
actctggctaagtttgactgaacaaatttgaaatacactatattaaggat
aacagtaagttgatattcctccgcatttttggatgacaggtgggaaacag
ggagaaggggtatgactggctccgtagtacaagaccaattggctttttta
ttttggggtgggaggcagtgaagacagtacggtctccaatctctctcccc
cctattaattaagttaaataaggcaacacttaactgaggtgatcaaaaga
ttttttcatccgtagatgagtgggcttttaaccttggcttgggtggacat
tgacccgattcctcccgtggatgctgtcacgacccacacctgtggctctc
ggtatctttttggggaggggaggcagagccgaaaatatttttggttttta
gccaaaatttgataccaacctccttcaaaccgggtttatctcacaggaaa
ctcagaaatggtcaagctggaccttcccctgcagtatctctctgcaccaa
gcgatacccatactgaatttgtacgatcacaaaccagtatgcacagttct
gagtgctgtgcagctcctaaaggagaattatcaacctcagatatagcaag
acctaggcaagaattatgtcattagtaacaccacgacttgtggctaaaat
aggagctggaagtcgttcctcctcatccctgtattttccacagcctaagg
agctaagacaccttgcagtaacagcaagggtaaaaagccagaggtcagct
aagggactaagcctgtctatcaaataaaaaccaattttattaatatagaa
atatctactttttctagccctctgtaacctattttaactcagactgaagc
cacatgctggaatgtccttggatgagatacagctgccacctgtgctcctc
aggggccggaatgccatctgcttgcttcggtcggaatgttgaattaactg
ccttggaaagacacaatctctcgaacaggttggagaaagtatgggaaaga
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_17341818_17342989
seq2: B6Ng01-346E20.b_46_1208 (reverse)

seq1  TGTTGCAAATATTAAAATGACATATGC-TTCTGT-GATTCTCTTTTGATG  48
      ||||||  |  |||||  |||||| || |||||| ||||||| |||||||
seq2  TGTTGC--AGTTTAAATGGACATAGGCTTTCTGTGGATTCTC-TTTGATG  47

seq1  TTGACAACTTAAACTGTTAAAACTAAACAAGGTATCATTCTTATTATCCT  98
       |||||||| || ||||| |||||||||||||||||||   |||||| ||
seq2  -TGACAACTAAACCTGTT-AAACTAAACAAGGTATCAT--CTATTAT-CT  92

seq1  ACATTGGAAATTATAGAATTAAGGGCCCAGTAGTTCTTGTAACTGGGCTG  148
      ||| |||||| |||||||||| || |||||||||||||||||||||||||
seq2  ACA-TGGAAA-TATAGAATTAGGGCCCCAGTAGTTCTTGTAACTGGGCTG  140

seq1  AGGTTTCCTTAGAAATTATAAACTGTGATGACCAGTCTTCATTTCCCCAG  198
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTT-CTTAGAAATTATAAACTGTGATGACCAGTCTTCATTTCCCCAG  189

seq1  AATTTTAAATCACTAATCTGGACTAGAACCTGGTTATATGTACGTTATGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAATCACTAATCTGGACTAGAACCTGGTTATATGTACGTTATGA  239

seq1  ATTGTTTCCTAGGTGATTCTAAAGTACAATCTAGTTTGAGAGTGACTCAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTCCTAGGTGATTCTAAAGTACAATCTAGTTTGAGAGTGACTCAG  289

seq1  TTGGGCTAATTTCTCTTATATTTTTGGTTGTGAGCCTAGCCTTTAACGGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTAATTTCTCTTATATTTTTGGTTGTGAGCCTAGCCTTTAACGGC  339

seq1  TGAGCCATCTCTCCAGCCCTAGGGCTAATTTCTCAACATCGAAGCTTGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCTCTCCAGCCCTAGGGCTAATTTCTCAACATCGAAGCTTGTG  389

seq1  TTTGATAGCAAAAGTTTGGAAAGTTCTTGTCACAACTGGACTATGTGGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAGCAAAAGTTTGGAAAGTTCTTGTCACAACTGGACTATGTGGGA  439

seq1  AGACAAGTCTCATGATGAACAAACAGTTGTTTGAATCTGAAGATCAAAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGTCTCATGATGAACAAACAGTTGTTTGAATCTGAAGATCAAAGG  489

seq1  GATGTCACTGTTGATGAGTAGGTCACAAGTTGAGTATCAGGCCAGGTGGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCACTGTTGATGAGTAGGTCACAAGTTGAGTATCAGGCCAGGTGGC  539

seq1  ACCAAATCCTTAGAAATCTCTCAGTTGACTGGAAACAACAAATGACTATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATCCTTAGAAATCTCTCAGTTGACTGGAAACAACAAATGACTATA  589

seq1  CCAATTGCATTTGTTTGGATTCTCCCAATCCATTTAACATCATTATGTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTGCATTTGTTTGGATTCTCCCAATCCATTTAACATCATTATGTGT  639

seq1  CTGTTGCTGTGGGAATATCATATAATGTTGCAGAGACTAAGTACCTTCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCTGTGGGAATATCATATAATGTTGCAGAGACTAAGTACCTTCAG  689

seq1  TTTAGTATGCAAGAGTGGGGCAAAATAATCAGGATAGGTTGCAAACATTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTATGCAAGAGTGGGGCAAAATAATCAGGATAGGTTGCAAACATTT  739

seq1  TGATTTTCATTAATTTGAACTTAAAATAGCAATGCTATCTGCGAAAAAGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTCATTAATTTGAACTTAAAATAGCAATGCTATCTGCGAAAAAGC  789

seq1  TATATAATAAAATTCATATGATTTTAAAATTATATATCTCATAAAAATCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATAAAATTCATATGATTTTAAAATTATATATCTCATAAAAATCT  839

seq1  ATATAATTCAAAACCAATTAACAGTGTGGATAATAGTTTCAGAAAACTAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTCAAAACCAATTAACAGTGTGGATAATAGTTTCAGAAAACTAG  889

seq1  CACTATATACTCATTCAAATTTATACATGAGTTAAATTAATGAATAAAAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATATACTCATTCAAATTTATACATGAGTTAAATTAATGAATAAAAC  939

seq1  TGTATACCTTCACCATCTATCTTATTGTATATATACTATAGGATGGTAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACCTTCACCATCTATCTTATTGTATATATACTATAGGATGGTAAG  989

seq1  CTTTCTGACTCAGGAAAACTTTTCCTATAAAATCAAAATAAATGATTATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGACTCAGGAAAACTTTTCCTATAAAATCAAAATAAATGATTATT  1039

seq1  TACTGTCCTTATTGCTTTTGCTGTGATAATATATCATAAATAAGGGAAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCCTTATTGCTTTTGCTGTGATAATATATCATAAATAAGGGAAGA  1089

seq1  TATAAAAGAAAGTATTTATTTGGAGCTCATGGTTCCAGAGGGTTAGAGTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGAAAGTATTTATTTGGAGCTCATGGTTCCAGAGGGTTAGAGTT  1139

seq1  CATGACCATCATCATGGAGAATTC  1172
      ||||||||||||||||||||||||
seq2  CATGACCATCATCATGGAGAATTC  1163