BAC Information

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BAC

Clone NameB6Ng01-347F15
Chromosome1 (Build37)
Map Location 111,880,299 - 112,021,843
singlet/doubletdoublet
Overlap geneCdh7
Upstream geneEG666508
Downstream geneLOC100041429, EG626652, Cdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347F15.bB6Ng01-347F15.g
ACCGA128980GA128981
length1,1421,134
definitionB6Ng01-347F15.b B6Ng01-347F15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,020,698 - 112,021,843)(111,880,299 - 111,881,435)
sequence
gaattctagcaattaaatatagaattggtaatatttagaatattaaatga
taatagtttgtatatattttataagaatataatttattcttagtatctat
tttacttgtttttattttaatttgctaagcaagctacttgaactttttaa
aataatttctgtagcacatatcaatgcctctaaaaatgattcagaaatgc
ttgaaaaatctagatttcagtagtccataattataattttctaaattttc
atttctaatttatgtattaaaaatgaaaatattgttataactattcctat
aactcaaacattgatatttgagttaataaaattaaacatgtctatcactt
atgtacaaatacttatgtattattaatatacaactatatatgagttaaag
gatttcttagaatgcttaatattgatgcacacctaatcctttttaatata
ttttgggattttaattatagtatcttattgtttcttttatttatacataa
cttataaaaattttatggaatttttttctgttgtatattaattatatttt
gacaatttttctgttactgctgatattaatctgaattttgtgggtatcag
atcataaatagccacaataaagaaacaccctattcttacttcattgtgca
ttagtcttcaagagtctccactatggctacgtttcttctccaacatagta
caacttgctcatcttaaatgattgagaaaactaattggaaaaactttgtt
gtcattttctaaacaaaaattcatcttctaaatgtatattcaataacatt
agcttttctttttttgataatagtagatgaatccacaggtctatcttgga
gaacttgactgctattaaattagagaaaataattgtgttcctttttagaa
acaagggttatcaatgaatagatttcttctttctaaaactactatgggac
ttttaccctttttatacatggtgcatatatatcatgacacagtttcagcc
actaaaactcacatggatcactacatgtacccttgaaagggatttggtga
ggctcttttgttgcagtttaaagagtatagagaaggaaagagggaggaag
aacattgttaaagtgaaatggcctaaaggctgtttatttaag

gaattcattctggacttggacatcttcgtgggttcacttggcacaaggct
agttgctggtattcagccttccagcctcccagcgtggattgatacaaaag
gaccttagctttgaatggcttcacggtttagatcattaacccttcggatt
tcttagatgtcatagttcaggtaagtaaagattaccaaaataaattaacc
ctgaactggggaaatcataagctgttagggaaaaaaaaaatcacagattt
agaatctctagactgtgaaaaatttgcatagtaattcattaatatttgta
aaacaccttttactttgcaagagatatatttaggtcatgtattaaattca
atatttataaaaataagacttaccctccacaatatcagtgcccagcaggt
gttttgttttgttttttacagaggtggattgacagaactttaatctctct
ttacagataggaaaatttattgtcatcgtattgaaattgcaaattgacag
tatttgctgttaaaggtagattgctagtgcaaaaaccaaaaatgtatttt
tagagttctgttgtagtaggaaccattattaaaaggaagtttgtgtagat
gcacggtcagcaaaatctaagtagttttgagtctttataaagagttgtta
aggggaaggaagaactaagagtaattccaactgcaccttccagaaaccca
ctcaaacagctcgttttctaaagaactggtcagacgtcatgttgagccaa
atgcttgctattctatgtgaaagagaaatgcattcaaatgactttcttta
tttttacgggctattttgaaaagcatggagtaactgcaaaagtataggtt
gctggccagcaacttcatggtaatcttccttgtgtactcctgtttaattg
tcagtggctaagtggaagctgtgaggcagcatccagttttaatagtttta
tctgagtaagcttgctgaaattttgtgtgtggaagagaaataaagcagag
gcacagcctatcaccctcctagagctattctagttgtagtgttactaaaa
gggcattgtgcacttctcagtgttggaggattactgttattaagactgcg
ataggtcattagattgcattaacttatcagttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_112020698_112021843
seq2: B6Ng01-347F15.b_52_1193 (reverse)

seq1  CTTAAAT-AACAGCCTTTAGCCATTTTCACTTTACCATTG-TCTTCCTCC  48
      ||||||| |||||||||||| |  |||||||||| || || |||||||||
seq2  CTTAAATAAACAGCCTTTAGGCCATTTCACTTTAACAATGTTCTTCCTCC  50

seq1  TCTTTTCCTTCTCTTATACTCTTTTAAACTTGCAAC-AAAGAGCCTCACC  97
         |||||||||| ||||||| ||||||| |||||| |||||||||||||
seq2  CTCTTTCCTTCTC-TATACTC-TTTAAAC-TGCAACAAAAGAGCCTCACC  97

seq1  AAATCCCCTTTCAAGGGTACATGTAGTTGATCCATGTTGAGTTTTAGTGG  147
      |||| ||||||||||||||||||||| ||||||||| |||||||||||||
seq2  AAAT-CCCTTTCAAGGGTACATGTAG-TGATCCATG-TGAGTTTTAGTGG  144

seq1  CTGAAACTGTGTCATGAATATATATGCACCATGTATAAAAAGGGTAAAAG  197
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTGAAACTGTGTCATG-ATATATATGCACCATGTATAAAAAGGGTAAAAG  193

seq1  TCCCATAGTAGTTTTAGAAAGAAGAAATCTATTCATTGATAACCCTTGTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATAGTAGTTTTAGAAAGAAGAAATCTATTCATTGATAACCCTTGTT  243

seq1  TCTAAAAAGGAACACAATTATTTTCTCTAATTTAATAGCAGTCAAGTTCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAAGGAACACAATTATTTTCTCTAATTTAATAGCAGTCAAGTTCT  293

seq1  CCAAGATAGACCTGTGGATTCATCTACTATTATCAAAAAAAGAAAAGCTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATAGACCTGTGGATTCATCTACTATTATCAAAAAAAGAAAAGCTA  343

seq1  ATGTTATTGAATATACATTTAGAAGATGAATTTTTGTTTAGAAAATGACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATTGAATATACATTTAGAAGATGAATTTTTGTTTAGAAAATGACA  393

seq1  ACAAAGTTTTTCCAATTAGTTTTCTCAATCATTTAAGATGAGCAAGTTGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTTTTTCCAATTAGTTTTCTCAATCATTTAAGATGAGCAAGTTGT  443

seq1  ACTATGTTGGAGAAGAAACGTAGCCATAGTGGAGACTCTTGAAGACTAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTTGGAGAAGAAACGTAGCCATAGTGGAGACTCTTGAAGACTAAT  493

seq1  GCACAATGAAGTAAGAATAGGGTGTTTCTTTATTGTGGCTATTTATGATC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAATGAAGTAAGAATAGGGTGTTTCTTTATTGTGGCTATTTATGATC  543

seq1  TGATACCCACAAAATTCAGATTAATATCAGCAGTAACAGAAAAATTGTCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACCCACAAAATTCAGATTAATATCAGCAGTAACAGAAAAATTGTCA  593

seq1  AAATATAATTAATATACAACAGAAAAAAATTCCATAAAATTTTTATAAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAATTAATATACAACAGAAAAAAATTCCATAAAATTTTTATAAGT  643

seq1  TATGTATAAATAAAAGAAACAATAAGATACTATAATTAAAATCCCAAAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATAAATAAAAGAAACAATAAGATACTATAATTAAAATCCCAAAAT  693

seq1  ATATTAAAAAGGATTAGGTGTGCATCAATATTAAGCATTCTAAGAAATCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAAAAGGATTAGGTGTGCATCAATATTAAGCATTCTAAGAAATCC  743

seq1  TTTAACTCATATATAGTTGTATATTAATAATACATAAGTATTTGTACATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTCATATATAGTTGTATATTAATAATACATAAGTATTTGTACATA  793

seq1  AGTGATAGACATGTTTAATTTTATTAACTCAAATATCAATGTTTGAGTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATAGACATGTTTAATTTTATTAACTCAAATATCAATGTTTGAGTTA  843

seq1  TAGGAATAGTTATAACAATATTTTCATTTTTAATACATAAATTAGAAATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATAGTTATAACAATATTTTCATTTTTAATACATAAATTAGAAATG  893

seq1  AAAATTTAGAAAATTATAATTATGGACTACTGAAATCTAGATTTTTCAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAGAAAATTATAATTATGGACTACTGAAATCTAGATTTTTCAAG  943

seq1  CATTTCTGAATCATTTTTAGAGGCATTGATATGTGCTACAGAAATTATTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTGAATCATTTTTAGAGGCATTGATATGTGCTACAGAAATTATTT  993

seq1  TAAAAAGTTCAAGTAGCTTGCTTAGCAAATTAAAATAAAAACAAGTAAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTTCAAGTAGCTTGCTTAGCAAATTAAAATAAAAACAAGTAAAA  1043

seq1  TAGATACTAAGAATAAATTATATTCTTATAAAATATATACAAACTATTAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACTAAGAATAAATTATATTCTTATAAAATATATACAAACTATTAT  1093

seq1  CATTTAATATTCTAAATATTACCAATTCTATATTTAATTGCTAGAATTC  1146
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAATATTCTAAATATTACCAATTCTATATTTAATTGCTAGAATTC  1142


seq1: chr1_111880299_111881435
seq2: B6Ng01-347F15.g_68_1201

seq1  GAATTCATTCTGGACTTGGACATCTTCGTGGGTTCACTTGGCACAAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTGGACTTGGACATCTTCGTGGGTTCACTTGGCACAAGGCT  50

seq1  AGTTGCTGGTATTCAGCCTTCCAGCCTCCCAGCGTGGATTGATACAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTGGTATTCAGCCTTCCAGCCTCCCAGCGTGGATTGATACAAAAG  100

seq1  GACCTTAGCTTTGAATGGCTTCACGGTTTAGATCATTAACCCTTCGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTAGCTTTGAATGGCTTCACGGTTTAGATCATTAACCCTTCGGATT  150

seq1  TCTTAGATGTCATAGTTCAGGTAAGTAAAGATTACCAAAATAAATTAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGATGTCATAGTTCAGGTAAGTAAAGATTACCAAAATAAATTAACC  200

seq1  CTGAACTGGGGAAATCATAAGCTGTTAGGGAAAAAAAAAATCACAGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTGGGGAAATCATAAGCTGTTAGGGAAAAAAAAAATCACAGATTT  250

seq1  AGAATCTCTAGACTGTGAAAAATTTGCATAGTAATTCATTAATATTTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTCTAGACTGTGAAAAATTTGCATAGTAATTCATTAATATTTGTA  300

seq1  AAACACCTTTTACTTTGCAAGAGATATATTTAGGTCATGTATTAAATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCTTTTACTTTGCAAGAGATATATTTAGGTCATGTATTAAATTCA  350

seq1  ATATTTATAAAAATAAGACTTACCCTCCACAATATCAGTGCCCAGCAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATAAAAATAAGACTTACCCTCCACAATATCAGTGCCCAGCAGGT  400

seq1  GTTTTGTTTTGTTTTTTACAGAGGTGGATTGACAGAACTTTAATCTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTTTTTTACAGAGGTGGATTGACAGAACTTTAATCTCTCT  450

seq1  TTACAGATAGGAAAATTTATTGTCATCGTATTGAAATTGCAAATTGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGATAGGAAAATTTATTGTCATCGTATTGAAATTGCAAATTGACAG  500

seq1  TATTTGCTGTTAAAGGTAGATTGCTAGTGCAAAAACCAAAAATGTATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCTGTTAAAGGTAGATTGCTAGTGCAAAAACCAAAAATGTATTTT  550

seq1  TAGAGTTCTGTTGTAGTAGGAACCATTATTAAAAGGAAGTTTGTGTAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTCTGTTGTAGTAGGAACCATTATTAAAAGGAAGTTTGTGTAGAT  600

seq1  GCACGGTCAGCAAAATCTAAGTAGTTTTGAGTCTTTATAAAGAGTTGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGTCAGCAAAATCTAAGTAGTTTTGAGTCTTTATAAAGAGTTGTTA  650

seq1  AGGGGAAGGAAGAACTAAGAGTAATTCCAACTGCACCTTCCAGAAACCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAGGAAGAACTAAGAGTAATTCCAACTGCACCTTCCAGAAACCCA  700

seq1  CTCAAACAGCTCGTTTTCTAAAGAACTGGTCAGACGTCATGTTGAGCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACAGCTCGTTTTCTAAAGAACTGGTCAGACGTCATGTTGAGCCAA  750

seq1  ATGCTTGCTATTCTATGTGAAAGAGAAATGCATTCAAATGACTTTCTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGCTATTCTATGTGAAAGAGAAATGCATTCAAATGACTTTCTTTA  800

seq1  TTTTTACGGGCTATTTTGAAAAGCATGGAGTAACTGCAAAAGTATAGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACGGGCTATTTTGAAAAGCATGGAGTAACTGCAAAAGTATAGGTT  850

seq1  GCTGGCCAGCAACTTCATGGTAATCTTCCTTGTGTACTCCTGTTTAATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCAGCAACTTCATGGTAATCTTCCTTGTGTACTCCTGTTTAATTG  900

seq1  TCAGTGGCTAAGTGGAAGCTGTGAGGCAGCATCCAGTTTTAATAGTTTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGCTAAGTGGAAGCTGTGAGGCAGCATCCAGTTTTAATAGTTTTA  950

seq1  TCTGAGTAAGCTTGCTGAAATTTTGTGTGTGGAAAGAGAAATAAAGCAAG  1000
      |||||||||||||||||||||||||||||||| |||||||||||||| ||
seq2  TCTGAGTAAGCTTGCTGAAATTTTGTGTGTGG-AAGAGAAATAAAGC-AG  998

seq1  AGGCACAGCCTATCACCCTCCTAGAAGCTATTCTAGTTTGTAGTGTTACT  1050
      |||||||||||||||||||||||| ||||||||||| |||||||||||||
seq2  AGGCACAGCCTATCACCCTCCTAG-AGCTATTCTAG-TTGTAGTGTTACT  1046

seq1  AAAAGGGCATTGTGCAC-TCTCAGTG-TGAAGTATTACTGTAATTAAAGA  1098
      ||||||||||||||||| |||||||| || || |||||||| ||| ||||
seq2  AAAAGGGCATTGTGCACTTCTCAGTGTTGGAGGATTACTGTTATT-AAGA  1095

seq1  CTGCGATAGGTCATTAGAATTGCATTAAC-TATCAGTTGA  1137
      ||||||||||||||||| ||||||||||| ||||||||||
seq2  CTGCGATAGGTCATTAG-ATTGCATTAACTTATCAGTTGA  1134


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