BAC Information

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BAC

Clone NameB6Ng01-347K06
Chromosome1 (Build37)
Map Location 128,648,553 - 128,800,959
singlet/doubletdoublet
Overlap geneE030049G20Rik
Upstream geneLypd1
Downstream geneLOC383559, Mgat5, LOC667090, Tmem163, Acmsd, Ccnt2, Ysk4, Rab3gap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347K06.bB6Ng01-347K06.g
ACCGA129183GA129184
length9881,121
definitionB6Ng01-347K06.b B6Ng01-347K06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,800,281 - 128,800,959)(128,648,553 - 128,649,671)
sequence
gaattcttccctcaaactagctctgttaatgctcccacaactgaggtaga
caaaaaataataaatctagagaacactcataaatataaatggctgttaaa
cctttcagtgggggtgatttcgagttaaagatgtaagatgttagcacaaa
tgccttggcaatctcaccatgactgtgtcatgactttaatttagcaagaa
ttaattgtgggtttaagatgctttagactttaatgagagaatagaacata
gccctgggtgtgttttattaacttggttgtgccttgtatttcaaaaccac
cttggaggagacaagctatgcatctttacaaatgtgtaagcgtttcacct
gcagccaatgaggactggaaaggacatggagagctgtggtgtttttttga
tgcactcattttcgaaatgacatgtttaaatcactgggcaagaggttgga
gaaatggcttagcagttcgttaagagcatgggctgttcttcccaagtact
aggattcaattcccagcacccatatggtggctcacaaatgtctgtagctc
caatccccacaggaacaaacatcctcttctgacctccactggtaccaggt
atccatgtgatttacacacacattcgtgaagacaaaacattcataaaaat
gtgttaaaaaatcatgggtcaagtgaaacttggactagtattttttctta
ctggccttcatccctccctgtcctcccattctttctttttatgtttcttg
tagcctggactacttagtctagctgaagatgagttttgcttttctcatcc
tcctgtgcatgcctcccaagtgatggggtcacaagaatgcaccaccatgc
ccttttcttctttgtgtacaagtcaaaataaggtgcctagcacgccttta
atcccagcacttgggagacagaggcaggtggattttctgaacttggaggc
cagccttggtctacaaagtgattccaggacagccaggg

gaattcctggtcccaagagagatactgtcacaaaaaataaggtgaagagt
cattgaagaagacatctccacattgacctatgggctccacctgcacatat
gagcacactcccgacacccacaacggagcgcaagagacacctcacctttt
tctgtcaatcattttcctctacttctcacccctttctcatatgacttaag
gagagcacaatagtatctgccatagctctgaacacacacacacgcgcaaa
cacacacacacacacacacacacacacacacacacacacacagagttatt
cagactctgtttttgaaggcatgagctcatcgaagatcaaccctccattg
ctcctaaaataaatccgggcagaatgacgccatttgtttcaagttctgca
atgtgactttttaaagaaaagctgtttgaaagtaaactcgggaaggaaat
gttttggttgtgtttgggtccccagtgaataacatcagaatgctccacac
tggtgaagcctggctaagagatggttatctaagtggatatacctcttcct
ttcccagtccatttcccgatgcagggcttattcttacatagagtgatcga
tctcctttgcccctagttagcgaagaccctgctgttccgcaggtagaatc
tcattggcagtcctgaggcccagatgtcagcttggaaacacatctggccc
tgggtccttggcaaactgactgtgacaggttccctcaacagctgcagtgg
cagggcgaggcttctaggtgtttaaatcatcctgctttcctggcctgctc
cctgtgtttgcattgtagccatttccctggaaccagccttgttcaaacag
gctgtctgcgccgtggaggccaacgctacatctgtgggctgaggttccct
ctgccatagtgaaatgcctccttgtgtgggccactcaggcccagagttac
caccgatgagcatgtggacaggctcccatctgtctgagggggatgggttt
gagatcctgacaagagatccctcttgtcattgtagaataatgttcaattt
gatgaggttgcttgaaagctgaagctttatcttaatgttggcttaagaga
aattccttctgtatatgagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_128800281_128800959
seq2: B6Ng01-347K06.b_45_723 (reverse)

seq1  GTTTCACTTGACCCATGATTTTTTAACACATTTTTATGAATGTTTTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACTTGACCCATGATTTTTTAACACATTTTTATGAATGTTTTGTCT  50

seq1  TCACGAATGTGTGTGTAAATCACATGGATACCTGGTACCAGTGGAGGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGAATGTGTGTGTAAATCACATGGATACCTGGTACCAGTGGAGGTCA  100

seq1  GAAGAGGATGTTTGTTCCTGTGGGGATTGGAGCTACAGACATTTGTGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGATGTTTGTTCCTGTGGGGATTGGAGCTACAGACATTTGTGAGC  150

seq1  CACCATATGGGTGCTGGGAATTGAATCCTAGTACTTGGGAAGAACAGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATATGGGTGCTGGGAATTGAATCCTAGTACTTGGGAAGAACAGCCC  200

seq1  ATGCTCTTAACGAACTGCTAAGCCATTTCTCCAACCTCTTGCCCAGTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTTAACGAACTGCTAAGCCATTTCTCCAACCTCTTGCCCAGTGAT  250

seq1  TTAAACATGTCATTTCGAAAATGAGTGCATCAAAAAAACACCACAGCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATGTCATTTCGAAAATGAGTGCATCAAAAAAACACCACAGCTCT  300

seq1  CCATGTCCTTTCCAGTCCTCATTGGCTGCAGGTGAAACGCTTACACATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCCTTTCCAGTCCTCATTGGCTGCAGGTGAAACGCTTACACATTT  350

seq1  GTAAAGATGCATAGCTTGTCTCCTCCAAGGTGGTTTTGAAATACAAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGATGCATAGCTTGTCTCCTCCAAGGTGGTTTTGAAATACAAGGCA  400

seq1  CAACCAAGTTAATAAAACACACCCAGGGCTATGTTCTATTCTCTCATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAAGTTAATAAAACACACCCAGGGCTATGTTCTATTCTCTCATTAA  450

seq1  AGTCTAAAGCATCTTAAACCCACAATTAATTCTTGCTAAATTAAAGTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAAGCATCTTAAACCCACAATTAATTCTTGCTAAATTAAAGTCAT  500

seq1  GACACAGTCATGGTGAGATTGCCAAGGCATTTGTGCTAACATCTTACATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGTCATGGTGAGATTGCCAAGGCATTTGTGCTAACATCTTACATC  550

seq1  TTTAACTCGAAATCACCCCCACTGAAAGGTTTAACAGCCATTTATATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTCGAAATCACCCCCACTGAAAGGTTTAACAGCCATTTATATTTA  600

seq1  TGAGTGTTCTCTAGATTTATTATTTTTTGTCTACCTCAGTTGTGGGAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTTCTCTAGATTTATTATTTTTTGTCTACCTCAGTTGTGGGAGCA  650

seq1  TTAACAGAGCTAGTTTGAGGGAAGAATTC  679
      |||||||||||||||||||||||||||||
seq2  TTAACAGAGCTAGTTTGAGGGAAGAATTC  679


seq1: chr1_128648553_128649671
seq2: B6Ng01-347K06.g_71_1191

seq1  GAATTCCTGGTCCCAAGAGAGATACTGTCACAAAAAATAAGGTGAAGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTCCCAAGAGAGATACTGTCACAAAAAATAAGGTGAAGAGT  50

seq1  CATTGAAGAAGACATCTCCACATTGACCTATGGGCTCCACCTGCACATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAGAAGACATCTCCACATTGACCTATGGGCTCCACCTGCACATAT  100

seq1  GAGCACACTCCCGACACCCACAACGGAGCGCAAGAGACACCTCACCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACACTCCCGACACCCACAACGGAGCGCAAGAGACACCTCACCTTTT  150

seq1  TCTGTCAATCATTTTCCTCTACTTCTCACCCCTTTCTCATATGACTTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAATCATTTTCCTCTACTTCTCACCCCTTTCTCATATGACTTAAG  200

seq1  GAGAGCACAATAGTATCTGCCATAGCTCTGAACACACACACACGCGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCACAATAGTATCTGCCATAGCTCTGAACACACACACACGCGCAAA  250

seq1  CACACACACACACACACACACACACACACACACACACACACAGAGTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACAGAGTTATT  300

seq1  CAGACTCTGTTTTTGAAGGCATGAGCTCATCGAAGATCAACCCTCCATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCTGTTTTTGAAGGCATGAGCTCATCGAAGATCAACCCTCCATTG  350

seq1  CTCCTAAAATAAATCCGGGCAGAATGACGCCATTTGTTTCAAGTTCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAAAATAAATCCGGGCAGAATGACGCCATTTGTTTCAAGTTCTGCA  400

seq1  ATGTGACTTTTTAAAGAAAAGCTGTTTGAAAGTAAACTCGGGAAGGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACTTTTTAAAGAAAAGCTGTTTGAAAGTAAACTCGGGAAGGAAAT  450

seq1  GTTTTGGTTGTGTTTGGGTCCCCAGTGAATAACATCAGAATGCTCCACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGTTGTGTTTGGGTCCCCAGTGAATAACATCAGAATGCTCCACAC  500

seq1  TGGTGAAGCCTGGCTAAGAGATGGTTATCTAAGTGGATATACCTCTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAGCCTGGCTAAGAGATGGTTATCTAAGTGGATATACCTCTTCCT  550

seq1  TTCCCAGTCCATTTCCCGATGCAGGGCTTATTCTTACATAGAGTGATCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGTCCATTTCCCGATGCAGGGCTTATTCTTACATAGAGTGATCGA  600

seq1  TCTCCTTTGCCCCTAGTTAGCGAAGACCCTGCTGTTCCGCAGGTAGAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTGCCCCTAGTTAGCGAAGACCCTGCTGTTCCGCAGGTAGAATC  650

seq1  TCATTGGCAGTCCTGAGGCCCAGATGTCAGCTTGGAAACACATCTGGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGCAGTCCTGAGGCCCAGATGTCAGCTTGGAAACACATCTGGCCC  700

seq1  TGGGTCCTTGGCAAACTGACTGTGACAGGTTCCCTCAACAGCTGCAGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCTTGGCAAACTGACTGTGACAGGTTCCCTCAACAGCTGCAGTGG  750

seq1  CAGGGCGAGGCTTCTAGGTGTTTAAATCATCCTGC-TTCCTGGCCTGCTC  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAGGGCGAGGCTTCTAGGTGTTTAAATCATCCTGCTTTCCTGGCCTGCTC  800

seq1  CCTGTGTTTGCATTGTAGCCATTTCCCTGGAACCAGCCTTGTTCAAACAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTTTGCATTGTAGCCATTTCCCTGGAACCAGCCTTGTTCAAACAG  850

seq1  GCTGTCTGCGCCGTGGAGGCCAACGCTACATCTGTGGGCTGAGGTTCCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTGCGCCGTGGAGGCCAACGCTACATCTGTGGGCTGAGGTTCCCT  900

seq1  CTGCCATAGTGAAATGCCTCCTTGTGTGGGCCACTCAGGCCCAGAGTTAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATAGTGAAATGCCTCCTTGTGTGGGCCACTCAGGCCCAGAGTTAC  950

seq1  CACCGATGAGCATGTGGACAGGCTCCCATCTGTCTGAGGGGGATGGG-TT  998
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CACCGATGAGCATGTGGACAGGCTCCCATCTGTCTGAGGGGGATGGGTTT  1000

seq1  GAGATCCTGACAAGAGATCCCTCTTGTCATTGTAGATAATTGTTCAATTT  1048
      ||||||||||||||||||||||||||||||||||||  | ||||||||||
seq2  GAGATCCTGACAAGAGATCCCTCTTGTCATTGTAGAATAATGTTCAATTT  1050

seq1  GATGAGGTTTGCTTTGAAAAGCTGAAGCTGTATC-TAATGTTGGCT--AG  1095
      ||||||| ||||||   |||||||||||| |||| |||||||||||  ||
seq2  GATGAGG-TTGCTT--GAAAGCTGAAGCTTTATCTTAATGTTGGCTTAAG  1097

seq1  AGAATATTCCTTCTGTAT-GGAGAA  1119
      |||| |||||||||||||  |||||
seq2  AGAA-ATTCCTTCTGTATATGAGAA  1121


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