BAC Information

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BAC

Clone NameB6Ng01-348L11
Chromosome1 (Build37)
Map Location 65,806,920 - 65,808,057
singlet/doubletsinglet
Overlap genenone
Upstream gene9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
Downstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348L11.bB6Ng01-348L11.g
ACCGA129928GA129929
length1,2561,134
definitionB6Ng01-348L11.b B6Ng01-348L11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaatgaaggaatatcaaatggccaagaagcacataaagaaatg
ttcaacattcttagtcatcagggaaatgcaaataaaatggccctgagatt
ccacctcacagcagtcagaatggctaagatcaaaaactcaggtgacatca
gatgctggcaaggatgtggagaaacaggaacacttctccattgttggtga
gattgcaagctggtacaaccactatggaaatcagtctgctagttcctcag
taaattgaacttattacctgaggacccagctataccactcctagacatat
atctaaaagatgctctaacatacaacaaggacacatgtttgactctgttc
atagcagccttattcataataaccagaagctggaaacaacccagatttcc
ttcaacagaggaatggacacagaaaatgtggtacatttacacaatggaat
actactctgctattaaaaacaatgactttatgaaattcttaggcaaatgg
gtggaactagaaaatatcatcctgagtgatgtaacccagtcacaaaagaa
cacataaggtatacactcattgataagtgaatattaaccccaaagctgga
atgcccaagatacaattcatagatcacatgaaactcaagaagaaggaaga
ccaaagtgtggatgcttcagtccttcttagaagatggacgacatactcaa
gggaggaaatatggacacaaaatgtggagcagagactgaaagaaaggcca
tccagagactgtcctgcatggggatccatcccatatacagttactcaacc
tagatcctattgtggattccaagaaatgctctctgaaggagcctgatata
cctgatatactcctcaggagtgagagccatttccagagcctgacaaatac
agaggtggatgctcgcagccaaccattggactaagcacagggtccacaat
ggaggagttagagaaactactgaaggacctgaagaggtttgcaacaccac
aggaagaatacatatcaaacaccagactccccagagctccacactaaact
accaccaaggagtatatacatggagtgacacatggctctagccacatatg
tagcagaggatgcttatttgacatcagtggggaaggagagaggccctggt
ctattgaaagctgaatgcccagtgtcaagaaatgctaggacggagtgagc
aggatgtggtgtggtggctgtgctgcatatactgtacacatataaacatc
tattgc
gaattcaatttccactagcctgagaataaaattcctcatataaatatgag
gaataaagtgttgggtatctgttcagtgtttaaattatatctggaaatgc
aggatattacttgagaatttcagaagacccaataaagcatttccatacta
tatttgatgaaataaagaaaattgtgtatctttttagtatgaaagcctta
agcatttggaatccattttatttgacaggtattgacttctagaagatata
aacctggtgtagtgtagacattgatatttgattcatatttataggttata
aatattgaagtattatagatttttccatttgtatactataaaaatgactg
aaatttattatttttaaatataccaaatatagtcttgttaattatttcta
caatattaattatcctttttcatttgcttttttaaatttagacttccttt
gaaaattattgaccatatatttaattttaataccatttaccctatgctgc
atcattctcattagcttgaaaaccaagtatttttattctgttgtggttga
ggtcccttgactttaaggacaatgcaatgctttatttgtatttgtagaga
cattaaaggaacaggaattaaatatcagaagatgtaaagcaaacaaccaa
gcaaatggaaaataaaaccaaaaggcataactctctttatatcaggcaaa
tcaaacttcaaactaaaactaattagaagatatttaaaagacagaacata
taaataaaagaaaaactcagcaagaacctacaccagtgttggttgttgac
agctttggttatcagagactttacctgaagccctgatgaactgagaaaaa
acaaagctccatctggaagctaaagaatcatgactggcagagccagtgat
agcctggggccagggccttgtgagctttcctctaagactctgacatagag
aagagaaaacagcgagccttctagaaaaccagggctgagcttgacacagc
tggtaatggcctgctgccagagctaggggactgtggcttcagacctgaga
cctactcttcttttatgcatcaatatcaggtctttctaatacacgtcaat
ccataggtaagaccttgaattttttaaatatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_65806920_65808057
seq2: B6Ng01-348L11.g_63_1196

seq1  GAATTCAATTTCCACTAGCCTGAGAATAAAATTCCTCATATAAATATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTCCACTAGCCTGAGAATAAAATTCCTCATATAAATATGAG  50

seq1  GAATAAAGTGTTGGGTATCTGTTCAGTGTTTAAATTATATCTGGAAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAGTGTTGGGTATCTGTTCAGTGTTTAAATTATATCTGGAAATGC  100

seq1  AGGATATTACTTGAGAATTTCAGAAGACCCAATAAAGCATTTCCATACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATTACTTGAGAATTTCAGAAGACCCAATAAAGCATTTCCATACTA  150

seq1  TATTTGATGAAATAAAGAAAATTGTGTATCTTTTTAGTATGAAAGCCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATGAAATAAAGAAAATTGTGTATCTTTTTAGTATGAAAGCCTTA  200

seq1  AGCATTTGGAATCCATTTTATTTGACAGGTATTGACTTCTAGAAGATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTGGAATCCATTTTATTTGACAGGTATTGACTTCTAGAAGATATA  250

seq1  AACCTGGTGTAGTGTAGACATTGATATTTGATTCATATTTATAGGTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGTGTAGTGTAGACATTGATATTTGATTCATATTTATAGGTTATA  300

seq1  AATATTGAAGTATTATAGATTTTTCCATTTGTATACTATAAAAATGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGAAGTATTATAGATTTTTCCATTTGTATACTATAAAAATGACTG  350

seq1  AAATTTATTATTTTTAAATATACCAAATATAGTCTTGTTAATTATTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATTATTTTTAAATATACCAAATATAGTCTTGTTAATTATTTCTA  400

seq1  CAATATTAATTATCCTTTTTCATTTGCTTTTTTAAATTTAGACTTCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTAATTATCCTTTTTCATTTGCTTTTTTAAATTTAGACTTCCTTT  450

seq1  GAAAATTATTGACCATATATTTAATTTTAATACCATTTACCCTATGCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTATTGACCATATATTTAATTTTAATACCATTTACCCTATGCTGC  500

seq1  ATCATTCTCATTAGCTTGAAAACCAAGTATTTTTATTCTGTTGTGGTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCTCATTAGCTTGAAAACCAAGTATTTTTATTCTGTTGTGGTTGA  550

seq1  GGTCCCTTGACTTTAAGGACAATGCAATGCTTTATTTGTATTTGTAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTTGACTTTAAGGACAATGCAATGCTTTATTTGTATTTGTAGAGA  600

seq1  CATTAAAGGAACAGGAATTAAATATCAGAAGATGTAAAGCAAACAACCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAGGAACAGGAATTAAATATCAGAAGATGTAAAGCAAACAACCAA  650

seq1  GCAAATGGAAAATAAAACCAAAAGGCATAACTCTCTTTATATCAGGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGGAAAATAAAACCAAAAGGCATAACTCTCTTTATATCAGGCAAA  700

seq1  TCAAACTTCAAACTAAAACTAATTAGAAGATATTTAAAAGACAGAACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTTCAAACTAAAACTAATTAGAAGATATTTAAAAGACAGAACATA  750

seq1  TAAATAAAAGAAAAACTCAGCAAGAACCTACACCAGTGTTGGTTGTTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAAGAAAAACTCAGCAAGAACCTACACCAGTGTTGGTTGTTGAC  800

seq1  AGCTTTGGTTATCAGAGACTTTACCTGAAGCCCTGATGAACTGAGAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGGTTATCAGAGACTTTACCTGAAGCCCTGATGAACTGAGAAAAA  850

seq1  ACAAAGCTCCATCTGGAAGCTAAAGAATCATGACTGGCAGAGCCAGTGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCTCCATCTGGAAGCTAAAGAATCATGACTGGCAGAGCCAGTGAT  900

seq1  AGCCTGGGGCCAGGGCCTTGTGAGCTTTCCTCTAAGACTCTGACATAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGGCCAGGGCCTTGTGAGCTTTCCTCTAAGACTCTGACATAGAG  950

seq1  AAGAG-AAACAGCGAGCCTTCTAGAAAACCAGGGCTGAGCTTGACACAGC  999
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAACAGCGAGCCTTCTAGAAAACCAGGGCTGAGCTTGACACAGC  1000

seq1  TGGTAATGGCCTGGTGCCAGAGCCTTAGGGGAACTGTGGCTTCAGAACCC  1049
      ||||||||||||| |||||||||  |||||| ||||||||||||||  ||
seq2  TGGTAATGGCCTGCTGCCAGAGC--TAGGGG-ACTGTGGCTTCAGA--CC  1045

seq1  TGAGAACTTAACTCTTCTTTTTATGCATCAAATATTCCAAGTCTTTCTAT  1099
      ||||| ||  ||||||| ||||||||||| |||||  || ||||||||| 
seq2  TGAGACCT--ACTCTTC-TTTTATGCATC-AATAT--CAGGTCTTTCTAA  1089

seq1  TACACGGTCAATATTCCATA-GTAGGGGC---------TTAAATATTTT  1138
      ||||| |||||   |||||| ||| |  |         |||||||||||
seq2  TACAC-GTCAA---TCCATAGGTAAGACCTTGAATTTTTTAAATATTTT  1134