BAC Information

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BAC

Clone NameB6Ng01-349C04
Chromosome1 (Build37)
Map Location 72,147,278 - 72,234,126
singlet/doubletdoublet
Overlap geneLOC100043255, Mreg
Upstream geneBard1, LOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937
Downstream genePecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349C04.bB6Ng01-349C04.g
ACCGA130211GA130212
length1,169355
definitionB6Ng01-349C04.b B6Ng01-349C04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,232,942 - 72,234,126)(72,147,278 - 72,147,632)
sequence
gaattcatgttaaatgtcagagcattctccttaatgcctttaaaggcata
gtcggaggacagaaattctctgcttacgtttttggcagatgagtaaccac
atgatcaaaaatgtatgcagttgtcatgataggaacctgccaacttgtca
cccaggtagtatttacacatcaacaggtgccacatggttaccagatgctt
gtgtgcatggaataatcctgtagaaaccacattggcccaaaccccagggg
aacagctagctaaatagtattagggttttttttattttaaatgttaaaga
caaaatcataatcatagcaagagggctaggttctggcaccctgttagcag
gcatggcacacagtttctgtaaggtttaaaatagtgtctggccttcctta
ggggctatttctagtgttggatcctatgttcaggctatcatgtccttgat
ccagaaagaaacagcagagtatagttgattgggatatttgcagagaaaga
aagggctgacctgatcgcagaccaggctcgtggaggatccctggagtgcc
cggagacttgggttttccagtcgggctctgcattacttgccccagcaggt
ctccagagttgggcaaacctcatcctttcagggacacctgattgcctgca
catggcagagcattgcctagtgttggagatagggccgcaagtcacaccaa
ccacaagtcacaaaaccacagggggacgtttaagctgttctccagataat
tctgggttcttccaaatgctttttatgggggattcgaataatcagtctct
gaaggcattcttttttgttggcttttttgaagtgttggggttcaacctag
ggcactagccaattgctctaagtctgagccaagcccttggtcccaaatgc
ctcagttctgcattttactttgctagcaactgttcggatctaggtgacct
gatgagggatccggaaagcacaggagccgaggtgccaggggccccgccct
gttttctgggtagcagtatttatgagtactgtgctgtgtgctgagcagtg
tgcgtgtggcatgctgtcctgacagtatgagttctctgaagctcggggag
gggactttcagcagaaagcttaagctcagaaactgatcatctctaaagct
gagaaggagggatactgcg
ccctcactcacatgatctctcttctcacctccttttgtttaaaaaaaaaa
ataaatggtgctagaaagatggttaagtgggtaaaatgtttgtcgtgaaa
gtctgaggaccccagaactcatacatctctaacctcaatgctccaagcaa
aacaatacaaaagaatcaggatcctgaactagtcagatagggagattggt
gtcttctaaccatcagttcccttcttcgtatttctactaaaacagatctt
tgacaagtagagaggagaccattattaagcaaggaggagaccaactgacc
cccaactagggtgtgtgtgtgtttgtgtatatgagtgtgtgtgtgtgtgt
gtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_72232942_72234126
seq2: B6Ng01-349C04.b_49_1217 (reverse)

seq1  CGCAGTTATCCCTCCCCTTTCCTCCAACCCTTTGAGATGATTCAGTTTCC  50
      ||||| |||||||||    | |||  | | || ||||||| ||||||| |
seq2  CGCAG-TATCCCTCC----TTCTC--AGCTTTAGAGATGA-TCAGTTT-C  41

seq1  TGAGCTTTTAGCTTTCCTGCTGAAAGTCCCCCTCCCCGAGCTTCAGGAGA  100
      ||||| || |||||| ||||||||||| ||||||||||||||||| ||||
seq2  TGAGC-TTAAGCTTT-CTGCTGAAAGT-CCCCTCCCCGAGCTTCA-GAGA  87

seq1  ACTCAATACTTGTCAGGACAGCATGCCACACGCACACTGCTCAGCACACA  150
      |||| |||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACTC-ATAC-TGTCAGGACAGCATGCCACACGCACACTGCTCAGCACACA  135

seq1  GCACAGTACTTCATAAATACTGCTACCCAGAAAACAGGGCGGGGCCCCTG  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTAC-TCATAAATACTGCTACCCAGAAAACAGGGCGGGGCCCCTG  184

seq1  GCACCTCGGCTCCTGTGCTTTCCGGATCCCTCATCAGGTCACCTAGATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTCGGCTCCTGTGCTTTCCGGATCCCTCATCAGGTCACCTAGATCC  234

seq1  GAACAGTTGCTAGCAAAGTAAAATGCAGAACTGAGGCATTTGGGACCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTTGCTAGCAAAGTAAAATGCAGAACTGAGGCATTTGGGACCAAG  284

seq1  GGCTTGGCTCAGACTTAGAGCAATTGGCTAGTGCCCTAGGTTGAACCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGCTCAGACTTAGAGCAATTGGCTAGTGCCCTAGGTTGAACCCCA  334

seq1  ACACTTCAAAAAAGCCAACAAAAAAGAATGCCTTCAGAGACTGATTATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCAAAAAAGCCAACAAAAAAGAATGCCTTCAGAGACTGATTATTC  384

seq1  GAATCCCCCATAAAAAGCATTTGGAAGAACCCAGAATTATCTGGAGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCCCATAAAAAGCATTTGGAAGAACCCAGAATTATCTGGAGAACA  434

seq1  GCTTAAACGTCCCCCTGTGGTTTTGTGACTTGTGGTTGGTGTGACTTGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAACGTCCCCCTGTGGTTTTGTGACTTGTGGTTGGTGTGACTTGCG  484

seq1  GCCCTATCTCCAACACTAGGCAATGCTCTGCCATGTGCAGGCAATCAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTATCTCCAACACTAGGCAATGCTCTGCCATGTGCAGGCAATCAGGT  534

seq1  GTCCCTGAAAGGATGAGGTTTGCCCAACTCTGGAGACCTGCTGGGGCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGAAAGGATGAGGTTTGCCCAACTCTGGAGACCTGCTGGGGCAAG  584

seq1  TAATGCAGAGCCCGACTGGAAAACCCAAGTCTCCGGGCACTCCAGGGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAGAGCCCGACTGGAAAACCCAAGTCTCCGGGCACTCCAGGGATC  634

seq1  CTCCACGAGCCTGGTCTGCGATCAGGTCAGCCCTTTCTTTCTCTGCAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACGAGCCTGGTCTGCGATCAGGTCAGCCCTTTCTTTCTCTGCAAAT  684

seq1  ATCCCAATCAACTATACTCTGCTGTTTCTTTCTGGATCAAGGACATGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAATCAACTATACTCTGCTGTTTCTTTCTGGATCAAGGACATGATA  734

seq1  GCCTGAACATAGGATCCAACACTAGAAATAGCCCCTAAGGAAGGCCAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAACATAGGATCCAACACTAGAAATAGCCCCTAAGGAAGGCCAGAC  784

seq1  ACTATTTTAAACCTTACAGAAACTGTGTGCCATGCCTGCTAACAGGGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTAAACCTTACAGAAACTGTGTGCCATGCCTGCTAACAGGGTGC  834

seq1  CAGAACCTAGCCCTCTTGCTATGATTATGATTTTGTCTTTAACATTTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCTAGCCCTCTTGCTATGATTATGATTTTGTCTTTAACATTTAAA  884

seq1  ATAAAAAAAACCCTAATACTATTTAGCTAGCTGTTCCCCTGGGGTTTGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAAACCCTAATACTATTTAGCTAGCTGTTCCCCTGGGGTTTGGG  934

seq1  CCAATGTGGTTTCTACAGGATTATTCCATGCACACAAGCATCTGGTAACC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTGGTTTCTACAGGATTATTCCATGCACACAAGCATCTGGTAACC  984

seq1  ATGTGGCACCTGTTGATGTGTAAATACTACCTGGGTGACAAGTTGGCAGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCACCTGTTGATGTGTAAATACTACCTGGGTGACAAGTTGGCAGG  1034

seq1  TTCCTATCATGACAACTGCATACATTTTTGATCATGTGGTTACTCATCTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATCATGACAACTGCATACATTTTTGATCATGTGGTTACTCATCTG  1084

seq1  CCAAAAACGTAAGCAGAGAATTTCTGTCCTCCGACTATGCCTTTAAAGGC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAACGTAAGCAGAGAATTTCTGTCCTCCGACTATGCCTTTAAAGGC  1134

seq1  ATTAAGGAGAATGCTCTGACATTTAACATGAATTC  1185
      |||||||||||||||||||||||||||||||||||
seq2  ATTAAGGAGAATGCTCTGACATTTAACATGAATTC  1169

seq1: chr1_72147278_72147632
seq2: B6Ng01-349C04.g_72_426

seq1  CCCTCACTCACATGATCTCTCTTCTCACCTCCTTTTGTTTAAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACTCACATGATCTCTCTTCTCACCTCCTTTTGTTTAAAAAAAAAA  50

seq1  ATAAATGGTGCTAGAAAGATGGTTAAGTGGGTAAAATGTTTGTCGTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGGTGCTAGAAAGATGGTTAAGTGGGTAAAATGTTTGTCGTGAAA  100

seq1  GTCTGAGGACCCCAGAACTCATACATCTCTAACCTCAATGCTCCAAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGGACCCCAGAACTCATACATCTCTAACCTCAATGCTCCAAGCAA  150

seq1  AACAATACAAAAGAATCAGGATCCTGAACTAGTCAGATAGGGAGATTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATACAAAAGAATCAGGATCCTGAACTAGTCAGATAGGGAGATTGGT  200

seq1  GTCTTCTAACCATCAGTTCCCTTCTTCGTATTTCTACTAAAACAGATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTAACCATCAGTTCCCTTCTTCGTATTTCTACTAAAACAGATCTT  250

seq1  TGACAAGTAGAGAGGAGACCATTATTAAGCAAGGAGGAGACCAACTGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGTAGAGAGGAGACCATTATTAAGCAAGGAGGAGACCAACTGACC  300

seq1  CCCAACTAGGGTGTGTGTGTGTTTGTGTATATGAGTGTGTGTGTGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTAGGGTGTGTGTGTGTTTGTGTATATGAGTGTGTGTGTGTGTGT  350

seq1  GTGTG  355
      |||||
seq2  GTGTG  355