BAC Information

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BAC

Clone NameB6Ng01-349C20
Chromosome1 (Build37)
Map Location 94,544,229 - 94,545,351
singlet/doubletsinglet
Overlap geneOtos
Upstream geneTwist2, Hdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2
Downstream geneGpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349C20.bB6Ng01-349C20.g
ACCGA130243GA130244
length1,2011,120
definitionB6Ng01-349C20.b B6Ng01-349C20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaagacttttatcatgaatgggtgttggattttg
tcaaatactttctcagcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatactggattacgttgatggatttccgtatattgaacc
atccctgcatccctgggatgaaacctacttggtcaggatggatgattgtt
ttgatgtgttcttggattcggttagcaagaactttattgaggatttttgc
atcgatattcataagggaaattggtctgaagttctctatctttgttgggt
ctttttgtggtttaggtatcagagtaattgtggcttcatagaataaattg
ggtagagcaccttttgtttctattttgtggaatagtttgtgaagaactgg
gattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaatgactgcttctatttct
ttaggggatataggactgtttagattaataacctaatcttgatttaactt
tggtacctggtatctgtctagaaacttgtccatttcatccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttatggatt
tgttcaggatctgttgttatgtttcccttttcatttctgattttgttaat
taggatgctttccctgtgccctttagtgagtctggctaagggtttatcta
tcttgttgattttctcaaagaaccagctcctcgattggttgattctctga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccttctactcctcttgggtgaatttgcttccttttgttctagag
cttttaaggtgtgttgtcaagctgctatgtgtgccctctctagtttcttt
gggaggcactcagagctatgagttttccttttagaaatgctttcattgtg
tcccatacgttgggtattgttgtggcttcatttcattaactccaaaagtc
cttattcttcttattcttcctgaccatggtgtcatgaagagtgtgttcag
ttccacgtgatgttgccttctattaattaattgtatggaatcagctatgc
tcatggtgaatctgaatggatgctccaacggaacatactctccatagaca
t
gaattctcccttttcatgtccaaggtaacatgtttagttaagctctttaa
aagtccgatagggatgtgtgtgtttgaggacaaacatgggtgacattaga
agtctgcgcccccctcctttgtaggagcagggatggcacttcccaaagga
aatgtgtctaccagggcatgtttagagggacaaggggcagcatgacttct
agaacctctgaatcccagctctgtgtggtcacatgacgccactctccttg
ggtttgaatccagccagaagactccagccctgtcagtgaggtactgctca
gtccctgggacacccgggtactctgcaggcacaagcgggagggcaatgct
gccatctgggacggaggacttagggcagatgtcagtctgggagatgtgag
gagaaggcagactgtgagccatcaccccctacaccccagtacttatgctg
gccacggtccaggaaacaggaagtgactctaggatcagttataagccact
tccgaggctttgcggggctcggggatgtatgaacagtgcaaaacacaggc
ggaccattccgtggcagagaagaatgcaggaaaacacactggcacgatga
actgtggccttgagactttaaattatgagcacctgcctgtgtccatgttg
ggacagctcaatggatgatggtaagctactctgggctctgccttctagga
gaatgaatttgggttgcgctagcatttcagagtacaggcaggggcatctg
cgaggctcaaggagtaattattagtcagatgtggtgtccatggatggaca
gcagggggcgccagatacctctgactcattcccaatcctggcgttcgtta
ccacagggtccttttcaagctgactgccacgggagataacaaggggcctc
tgtccagcagagtggccttatacatctaagcatctcttgaatccaagcag
acagactgttaagaccttggaggttccctccgagtttctgtgtggggcgg
gatatatgcactggattatcatgcaggcttctgagcagtcactgggcaag
tttcagtttgctccattctatatgggtattgtcttggtccgactttggga
gctttgagatttcgaactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_94544229_94545351
seq2: B6Ng01-349C20.g_67_1186 (reverse)

seq1  AGAGTTCGAATTCTCAAAAGCTCCCAAAGGTCGGGCCCAGGAACAATA-C  49
      |||||||||| |||| |||||||||||| ||||| || ||  |||||| |
seq2  AGAGTTCGAAATCTC-AAAGCTCCCAAA-GTCGGACCAAG--ACAATACC  46

seq1  CATATAGGATGG-GCAAACTTGAAACCTGCCCAGTGACTGCTCAGAAGCC  98
      ||||||| |||| |||||| |||||| |||||||||||||||||||||||
seq2  CATATAGAATGGAGCAAAC-TGAAACTTGCCCAGTGACTGCTCAGAAGCC  95

seq1  TGCATGAT-ATCCAGTGCATAATATCCCGCCCCACACAGAAACTCGGAGG  147
      |||||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  TGCATGATAATCCAGTGCAT-ATATCCCGCCCCACACAGAAACTCGGAGG  144

seq1  GAACCTCCAAGGTCTTAACAGTCTGTCTGCTTGGATTCAAGAGATGCTTA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCCAAGGTCTTAACAGTCTGTCTGCTTGGATTCAAGAGATGCTTA  194

seq1  GATGTATAAGGCCACTCTGCTGGACAGAGGCCCCTTGTTATCTCCCGTGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATAAGGCCACTCTGCTGGACAGAGGCCCCTTGTTATCTCCCGTGG  244

seq1  CAGTCAGCTTGAAAAGGACCCTGTGGTAACGAACGCCAGGATTGGGAATG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGCTTGAAAAGGACCCTGTGGTAACGAACGCCAGGATTGGGAATG  294

seq1  AGTCAGAGGTATCTGGCGCCCCCTGCTGTCCATCCATGGACACCACATCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAGGTATCTGGCGCCCCCTGCTGTCCATCCATGGACACCACATCT  344

seq1  GACTAATAATTACTCCTTGAGCCTCGCAGATGCCCCTGCCTGTACTCTGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAATAATTACTCCTTGAGCCTCGCAGATGCCCCTGCCTGTACTCTGA  394

seq1  AATGCTAGCGCAACCCAAATTCATTCTCCTAGAAGGCAGAGCCCAGAGTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAGCGCAACCCAAATTCATTCTCCTAGAAGGCAGAGCCCAGAGTA  444

seq1  GCTTACCATCATCCATTGAGCTGTCCCAACATGGACACAGGCAGGTGCTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACCATCATCCATTGAGCTGTCCCAACATGGACACAGGCAGGTGCTC  494

seq1  ATAATTTAAAGTCTCAAGGCCACAGTTCATCGTGCCAGTGTGTTTTCCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTAAAGTCTCAAGGCCACAGTTCATCGTGCCAGTGTGTTTTCCTG  544

seq1  CATTCTTCTCTGCCACGGAATGGTCCGCCTGTGTTTTGCACTGTTCATAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTCTCTGCCACGGAATGGTCCGCCTGTGTTTTGCACTGTTCATAC  594

seq1  ATCCCCGAGCCCCGCAAAGCCTCGGAAGTGGCTTATAACTGATCCTAGAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCGAGCCCCGCAAAGCCTCGGAAGTGGCTTATAACTGATCCTAGAG  644

seq1  TCACTTCCTGTTTCCTGGACCGTGGCCAGCATAAGTACTGGGGTGTAGGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCCTGTTTCCTGGACCGTGGCCAGCATAAGTACTGGGGTGTAGGG  694

seq1  GGTGATGGCTCACAGTCTGCCTTCTCCTCACATCTCCCAGACTGACATCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGGCTCACAGTCTGCCTTCTCCTCACATCTCCCAGACTGACATCT  744

seq1  GCCCTAAGTCCTCCGTCCCAGATGGCAGCATTGCCCTCCCGCTTGTGCCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAAGTCCTCCGTCCCAGATGGCAGCATTGCCCTCCCGCTTGTGCCT  794

seq1  GCAGAGTACCCGGGTGTCCCAGGGACTGAGCAGTACCTCACTGACAGGGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTACCCGGGTGTCCCAGGGACTGAGCAGTACCTCACTGACAGGGC  844

seq1  TGGAGTCTTCTGGCTGGATTCAAACCCAAGGAGAGTGGCGTCATGTGACC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCTTCTGGCTGGATTCAAACCCAAGGAGAGTGGCGTCATGTGACC  894

seq1  ACACAGAGCTGGGATTCAGAGGTTCTAGAAGTCATGCTGCCCCTTGTCCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGCTGGGATTCAGAGGTTCTAGAAGTCATGCTGCCCCTTGTCCC  944

seq1  TCTAAACATGCCCTGGTAGACACATTTCCTTTGGGAAGTGCCATCCCTGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACATGCCCTGGTAGACACATTTCCTTTGGGAAGTGCCATCCCTGC  994

seq1  TCCTACAAAGGAGGGGGGCGCAGACTTCTAATGTCACCCATGTTTGTCCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACAAAGGAGGGGGGCGCAGACTTCTAATGTCACCCATGTTTGTCCT  1044

seq1  CAAACACACACATCCCTATCGGACTTTTAAAGAGCTTAACTAAACATGTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACACACATCCCTATCGGACTTTTAAAGAGCTTAACTAAACATGTT  1094

seq1  ACCTTGGACATGAAAAGGGAGAATTC  1123
      ||||||||||||||||||||||||||
seq2  ACCTTGGACATGAAAAGGGAGAATTC  1120