BAC Information

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BAC

Clone NameB6Ng01-349K18
Chromosome1 (Build37)
Map Location 87,739,973 - 87,741,107
singlet/doubletsinglet
Overlap geneCab39
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik
Downstream geneItm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349K18.bB6Ng01-349K18.g
ACCGA130595GA130596
length1,2191,137
definitionB6Ng01-349K18.b B6Ng01-349K18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtaccccatttttaatggggttatttgaatt
tctggagtccagcttcttgagctctctgtatatattagatattagtcccc
tatcagatttaggattggtaaaaatcctttcccaatctgttggtggcctt
tttgtcttattgacagtatcttttgccttacagaagctttgcaattttat
gaggtcccatttgtcaattcttgatcttacagcacaagccattgctgttc
tgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtctctggtttcatgtggaggtctttgat
ccacttagtcttgagctttgtacaaggagataggaatgaatcaattcaca
ttcttctacatgataacaaccagttaagccagcaccatttgttgaaaatg
ctgtcttttttccactggatggttttagctcccttgtcaaagatcaagtg
accataggtgtgtggattcatttctgggtcttcaattctattccattgat
ctacccgcctttcactataccagtaccatgcagtttttatcacaattgct
ctgtagtacagcttgaggtcaggcatggtgatttcaccagaggttctttt
attgttgagaatagtttttactatcctaggtttcttgttattccagatga
atttgcaaattgccctttctaattcgttgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgctttcagcaggatagccatttt
tactatattaatcctgccaatccatgagcatgggagatctttccatcttc
tgagatcttcttcaatttttttcttcagagacttgaagttcttatcatac
agatctttcactttcttagttagagtcacaccaagggtattttatatttt
ttgtgactatgtgaagggtgttgtttccctaatttctttctcatcctgtt
tatcctttgtgtagaagaaaggacactgaatttgtttgagctaaatttat
aatccagctactgaagctgtttatcagtttaggagttcctctggggaatt
ttaagggtcaacttatatataacttatccgtatccatcctgcaatagcgg
aatattgactcctctccatttgtatccaatgaatctccttgtgtggtgga
actgctcctgcgggccata
gaattctaaaatatccaccaaactgcctaataaactgttgttaactatta
gcacacagttgctacttaatatttcataatttttctcaggaccataaagt
gaccatgaaatgaccttggtgtcacttggtcagaactgtttatgcctcat
tacaggtggccctggcccaaggtcacacacatggacaccaatccagcttg
agctcctttgtggagattactgagatctgggtatgcagggagttgatctg
cctctcacctcccaaaaatgtccctcacagaagctttttgtctgtccagt
catctactcctgaccttagactctgacttaacatcacttcctcagaaaac
ttttcctgatgtgtcatggttgtaattctacatgtgcttgtgggattatt
tagtaagttctctccttcattagactgtcagttccataaacacaaggacc
acaccacactggtatttacaacttttgaatttctggcacctaaactcttc
ctagtacatagcaagggcttagtgttaataaatacatcaatgaatggatg
aggaaaattagatgatgtgttcggggaagcatcatactcaatgttctgca
tggtatgctgtctaagaaagcttctaaccccaccccaagaattcacactg
ttcactgctgcacagggcttgtgctgtgtttcctcattaaagagggtgtt
caagaaactttgctcagttcccccaagtctcttaactgtgagagtttaaa
caagagaaataaaaaagctggaattaagttttcggcctctctggagatgc
agtagtcatttttactgaaacccttcagtaaccatctgctgctcagcgga
tgtcacatacaaggtctctctgcatgttgacaggtgctacaacccccttt
cacaggcagaaaggaaagttcaagcatcaatgggttgcaatgcaaaagag
gacacaattaccttccagggaagttaccaacaagagaaagcatctaagcc
tccttgtcaaagagcatgtccacctgtagctgctaccatgctgataaagc
tgatgtccctgagtaggtaacccacaaggaccgggctctaggaagccaac
tgctgatccccaagacctagaatagtgcctggaaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_87739973_87741107
seq2: B6Ng01-349K18.g_66_1202 (reverse)

seq1  TGTTT-CAAGCACTATTCTAGGGTCTGGGGATTCAGCAGTGGCCTGTACA  49
      ||||| || ||||||||||| ||||| |||  |||||||| | |  | | 
seq2  TGTTTCCAGGCACTATTCTA-GGTCTTGGGGATCAGCAGTTGGC--TTCC  47

seq1  TAGAAGCCCTGTCCTTGTGG--TACCTACTCAGGGGACATCAGCCTTTAA  97
      ||| ||||| ||||||||||  |||||||||| |||||||||| ||||| 
seq2  TAG-AGCCCGGTCCTTGTGGGTTACCTACTCA-GGGACATCAG-CTTTAT  94

seq1  CAAGCATGGTAGCAGGCTACAAGGTGGACATGCTCTTTGACAAGGAGGCT  147
      | |||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  C-AGCATGGTAGCA-GCTAC-AGGTGGACATGCTCTTTGACAAGGAGGCT  141

seq1  TAGATGCTTTCTC-TGTTGGTAACTCCCTTGGAA-GTAATTGTGTTCCTC  195
      ||||||||||||| ||||||||||| || ||||| ||||||||| |||||
seq2  TAGATGCTTTCTCTTGTTGGTAACTTCCCTGGAAGGTAATTGTG-TCCTC  190

seq1  TTTTGCATTGCAA-CCATTGATGCTTGAACTTTCCTTTCTGCCTGTG-AA  243
      ||||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  TTTTGCATTGCAACCCATTGATGCTTGAACTTTCCTTTCTGCCTGTGAAA  240

seq1  GGGGGTTGTAGCACCTGTC-ACATGCAGAGAGACCTTGTATGTGACATCC  292
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGGGGTTGTAGCACCTGTCAACATGCAGAGAGACCTTGTATGTGACATCC  290

seq1  GCTGAGCAGCAGATGGTTACTGAAGGG-TTCAGT-AAAATGACTACTGCA  340
      ||||||||||||||||||||||||||| |||||| |||||||||||||||
seq2  GCTGAGCAGCAGATGGTTACTGAAGGGTTTCAGTAAAAATGACTACTGCA  340

seq1  TCTCCAGAGAGGCCG-AAACTTAATTCCAGCTTTTTTATTTCTCTTGTTT  389
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCTCCAGAGAGGCCGAAAACTTAATTCCAGCTTTTTTATTTCTCTTGTTT  390

seq1  -AACTCTCACAGTTAAGAGACTTGGGGGAACTGAGCAAAGTTTCTTGAAC  438
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTCACAGTTAAGAGACTTGGGGGAACTGAGCAAAGTTTCTTGAAC  440

seq1  ACCCTCTTTAATGAGGAAACACAGCACAAGCCCTGTGCAGCAGTGAACAG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTTTAATGAGGAAACACAGCACAAGCCCTGTGCAGCAGTGAACAG  490

seq1  TGTGAATTCTTGGGGTGGGGTTAGAAGCTTTCTTAGACAGCATACCATGC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATTCTTGGGGTGGGGTTAGAAGCTTTCTTAGACAGCATACCATGC  540

seq1  AGAACATTGAGTATGATGCTTCCCCGAACACATCATCTAATTTTCCTCAT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATTGAGTATGATGCTTCCCCGAACACATCATCTAATTTTCCTCAT  590

seq1  CCATTCATTGATGTATTTATTAACACTAAGCCCTTGCTATGTACTAGGAA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCATTGATGTATTTATTAACACTAAGCCCTTGCTATGTACTAGGAA  640

seq1  GAGTTTAGGTGCCAGAAATTCAAAAGTTGTAAATACCAGTGTGGTGTGGT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTAGGTGCCAGAAATTCAAAAGTTGTAAATACCAGTGTGGTGTGGT  690

seq1  CCTTGTGTTTATGGAACTGACAGTCTAATGAAGGAGAGAACTTACTAAAT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGTTTATGGAACTGACAGTCTAATGAAGGAGAGAACTTACTAAAT  740

seq1  AATCCCACAAGCACATGTAGAATTACAACCATGACACATCAGGAAAAGTT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCACAAGCACATGTAGAATTACAACCATGACACATCAGGAAAAGTT  790

seq1  TTCTGAGGAAGTGATGTTAAGTCAGAGTCTAAGGTCAGGAGTAGATGACT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGGAAGTGATGTTAAGTCAGAGTCTAAGGTCAGGAGTAGATGACT  840

seq1  GGACAGACAAAAAGCTTCTGTGAGGGACATTTTTGGGAGGTGAGAGGCAG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGACAAAAAGCTTCTGTGAGGGACATTTTTGGGAGGTGAGAGGCAG  890

seq1  ATCAACTCCCTGCATACCCAGATCTCAGTAATCTCCACAAAGGAGCTCAA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTCCCTGCATACCCAGATCTCAGTAATCTCCACAAAGGAGCTCAA  940

seq1  GCTGGATTGGTGTCCATGTGTGTGACCTTGGGCCAGGGCCACCTGTAATG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATTGGTGTCCATGTGTGTGACCTTGGGCCAGGGCCACCTGTAATG  990

seq1  AGGCATAAACAGTTCTGACCAAGTGACACCAAGGTCATTTCATGGTCACT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAAACAGTTCTGACCAAGTGACACCAAGGTCATTTCATGGTCACT  1040

seq1  TTATGGTCCTGAGAAAAATTATGAAATATTAAGTAGCAACTGTGTGCTAA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTCCTGAGAAAAATTATGAAATATTAAGTAGCAACTGTGTGCTAA  1090

seq1  TAGTTAACAACAGTTTATTAGGCAGTTTGGTGGATATTTTAGAATTC  1135
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAACAACAGTTTATTAGGCAGTTTGGTGGATATTTTAGAATTC  1137