BAC Information

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BAC

Clone NameB6Ng01-350B24
Chromosome1 (Build37)
Map Location 82,319,770 - 82,320,951
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621020, LOC433328, EG665145, Irs1
Downstream geneRhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350B24.bB6Ng01-350B24.g
ACCGA130893GA130894
length1,1701,166
definitionB6Ng01-350B24.b B6Ng01-350B24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccacatgaaaggctgtcaggctgctgggagacaggaaggacaaaa
ggcttcacagggactcattgctgcactagagagcggctggcccaggcgca
gtaaacagaagcacaagatgatggataacacaaggattcttaaccgtttc
agaacataaaagttgtcaggggatgggggtgttaacagacaagcttaggg
gaagaggaatggaccaatcctctctgacaaaattgtatctaatgttggca
atatcaatgcacacctgtacagggcagtacagttaagggcatggtcctca
gcaggaattccacagcacactgaccaactggccttgggaaaactgtcagg
ctttcccctgtaccaggataacaggctcatttgagtttggaaggaccaag
tgagagatcaatcacacagcacacaaccatcatttgagaagtgatggtgg
tttatgcgcataaacaaataaattgggagaccgtaagaaaaacattggaa
atacttctgagtatttttataagatggtggtgactaaggttttctaagaa
tcctatcccacatttttaaactgtttcacgagactcaattatacacatgc
cttttaaacagtatagtacacgaaagtggaagcagaattatcattttcta
ttattgtgcgtgtgcataaaggtgttggggaggaagagcacacagcacag
tattcatatagacattaaaggacgactttatgcagctgggttttctctcc
acctggacatgggcccccaggactgacctcagactttcatggcgaacatc
attacccattgggccatctcaccagtcccataaattactttttaattaaa
ataaactgtataataaaatcgcaagccactctttgttaaggctagccagt
actgtgagaatttaatgacccttcctttatagagattaaaaaattttttt
tcatgatgtcagctaacaaaatttccctttcctttaaaagtgctattggg
ctattgggctcaacaccagtgatcagactatattacacatgaaaagtgac
tgaaaatgagctactagatttgcatatatcctagtgtggtccacactcta
agtgagtcgcgcaccccacgtcgttctgtcacacgcatgaaccttccgga
atcaatcatagccaagttct
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctttattgttgatg
agattgcaagcttgtaaaaccactctggaaatcagtacgtcggttcctca
gaaaattggacatagtactactggaggattccacaatatatctcctgacc
atattccagaagatgttccaaccagtaagaaggacacatgctccactata
ttcatagcagccttatttataatagccagaagctggaaagaacacagatg
ccccacaacagaagagtggatacagaaaatgtggtacatttacacaatgg
aatactactcaggtattaaaaagaatgaatttatgaaattcctaggcaaa
tggatggacctggggggcatcatcctgagtgaggtaacccaatcacaaaa
gaactctaatgatatgtactcactgataagtggatattagccctgaaact
tagaatacccaagatacaagatacaatttgcaaaatgcatgaaactcaag
aagaatgaagaccaaagtgtggacactttgctccttctttgaattgggaa
caaaacacccatggaaggagatacactgacaaagattggagctgagaaga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatgggatcacagggctccc
aatggaggagctagagaaagtacccaagagctaaagggatctgcacctat
agtggatcacatatgactaacagtaccccgagctcttgactctagctgca
tatgtatcaaaggatgactagtcggtcatcactgaagagagtccatttga
acacgctaactttattgctcagaacagagacgtcaggtcgaaaagggagt
ggtttgtggatagcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_82319770_82320951
seq2: B6Ng01-350B24.b_50_1219 (reverse)

seq1  AGAACTGGCTTATGATTGATCCCGAAAG--TCATGCGTGTTGACAGGACA  48
      |||||| |  |||||||||| ||| |||  ||||||||| |||||| || 
seq2  AGAACTTGGCTATGATTGATTCCGGAAGGTTCATGCGTG-TGACAGAAC-  48

seq1  GAAGTGGGGTTGGCGCGAACTCACCTAGAGTTGTGGAACAACACTAAGGA  98
      || |||||||  ||||| |||||| ||||| ||||| || ||||| ||||
seq2  GACGTGGGGT--GCGCG-ACTCACTTAGAG-TGTGG-ACCACACT-AGGA  92

seq1  TTATATGCAAAATCTAGTAGCTTCAATTTTTCAGTCACTTTTCATGTGTA  148
       ||||||| |||||||||||| |||  |||||||||||||||||||||| 
seq2  -TATATGC-AAATCTAGTAGC-TCA--TTTTCAGTCACTTTTCATGTGT-  136

seq1  AATATAGTCTGATCACTGGTGTTGAG-CCAATAG-CCAATAGCACTTTTT  196
      |||||||||||||||||||||||||| ||||||| |||||||||| ||||
seq2  AATATAGTCTGATCACTGGTGTTGAGCCCAATAGCCCAATAGCAC-TTTT  185

seq1  AAAGGAAGGGGAAATTTTGTTAGCTGACATCATGAAAAAAAATTTTTTTA  246
      ||||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  AAAGGAAAGGGAAATTTTGTTAGCTGACATCATGAAAAAAAA-TTTTTTA  234

seq1  ATCTCTATAAAGGAAGGGTCATTAAATTCTCACAGTACTGGCTAGCCTTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTATAAAGGAAGGGTCATTAAATTCTCACAGTACTGGCTAGCCTTA  284

seq1  ACAAAGAGTGGCTTGCGATTTTATTATACAGTTTATTTTAATTAAAAAGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGTGGCTTGCGATTTTATTATACAGTTTATTTTAATTAAAAAGT  334

seq1  AATTTATGGGACTGGTGAGATGGCCCAATGGGTAATGATGTTCGCCATGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATGGGACTGGTGAGATGGCCCAATGGGTAATGATGTTCGCCATGA  384

seq1  AAGTCTGAGGTCAGTCCTGGGGGCCCATGTCCAGGTGGAGAGAAAACCCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGAGGTCAGTCCTGGGGGCCCATGTCCAGGTGGAGAGAAAACCCA  434

seq1  GCTGCATAAAGTCGTCCTTTAATGTCTATATGAATACTGTGCTGTGTGCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATAAAGTCGTCCTTTAATGTCTATATGAATACTGTGCTGTGTGCT  484

seq1  CTTCCTCCCCAACACCTTTATGCACACGCACAATAATAGAAAATGATAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCCCAACACCTTTATGCACACGCACAATAATAGAAAATGATAAT  534

seq1  TCTGCTTCCACTTTCGTGTACTATACTGTTTAAAAGGCATGTGTATAATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCCACTTTCGTGTACTATACTGTTTAAAAGGCATGTGTATAATT  584

seq1  GAGTCTCGTGAAACAGTTTAAAAATGTGGGATAGGATTCTTAGAAAACCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCGTGAAACAGTTTAAAAATGTGGGATAGGATTCTTAGAAAACCT  634

seq1  TAGTCACCACCATCTTATAAAAATACTCAGAAGTATTTCCAATGTTTTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACCACCATCTTATAAAAATACTCAGAAGTATTTCCAATGTTTTTC  684

seq1  TTACGGTCTCCCAATTTATTTGTTTATGCGCATAAACCACCATCACTTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGGTCTCCCAATTTATTTGTTTATGCGCATAAACCACCATCACTTCT  734

seq1  CAAATGATGGTTGTGTGCTGTGTGATTGATCTCTCACTTGGTCCTTCCAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGATGGTTGTGTGCTGTGTGATTGATCTCTCACTTGGTCCTTCCAA  784

seq1  ACTCAAATGAGCCTGTTATCCTGGTACAGGGGAAAGCCTGACAGTTTTCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAATGAGCCTGTTATCCTGGTACAGGGGAAAGCCTGACAGTTTTCC  834

seq1  CAAGGCCAGTTGGTCAGTGTGCTGTGGAATTCCTGCTGAGGACCATGCCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCAGTTGGTCAGTGTGCTGTGGAATTCCTGCTGAGGACCATGCCC  884

seq1  TTAACTGTACTGCCCTGTACAGGTGTGCATTGATATTGCCAACATTAGAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGTACTGCCCTGTACAGGTGTGCATTGATATTGCCAACATTAGAT  934

seq1  ACAATTTTGTCAGAGAGGATTGGTCCATTCCTCTTCCCCTAAGCTTGTCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTGTCAGAGAGGATTGGTCCATTCCTCTTCCCCTAAGCTTGTCT  984

seq1  GTTAACACCCCCATCCCCTGACAACTTTTATGTTCTGAAACGGTTAAGAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACACCCCCATCCCCTGACAACTTTTATGTTCTGAAACGGTTAAGAA  1034

seq1  TCCTTGTGTTATCCATCATCTTGTGCTTCTGTTTACTGCGCCTGGGCCAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTGTTATCCATCATCTTGTGCTTCTGTTTACTGCGCCTGGGCCAG  1084

seq1  CCGCTCTCTAGTGCAGCAATGAGTCCCTGTGAAGCCTTTTGTCCTTCCTG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTCTCTAGTGCAGCAATGAGTCCCTGTGAAGCCTTTTGTCCTTCCTG  1134

seq1  TCTCCCAGCAGCCTGACAGCCTTTCATGTGGAATTC  1182
      ||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAGCAGCCTGACAGCCTTTCATGTGGAATTC  1170