BAC Information

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BAC

Clone NameMSMg01-045E04
Chromosome1 (Build37)
Map Location 114,560,169 - 114,560,360
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666578, Dsel, LOC547247, EG626897, LOC666615
Downstream geneLOC666635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045E04.T7 (MSMg01no045_e04.b1)MSMg01-045E04.TJ (MSMg01no045_e04.g1)
ACCAG275937AG275938
length752768
length of high quality
(start - end)
104 (192 - 295)191 (133 - 323)
definitionCHROMAT_FILE: MSMg01no045_e04.b1 PHD_FILE: MSMg01no045_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:10 2005CHROMAT_FILE: MSMg01no045_e04.g1 PHD_FILE: MSMg01no045_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNCCCCNNNNNNNNNNNNAAAANNTTTATT
TTCATTCATTACTAAATTTGCGGCGCTATACGATCACTATTCAAAGAGGA
CCGCGGAATTCCCTAACTTCCCTCATGGCAAATCCTTATTTGGTTAATAC
TGTCCTTACTGTCCTAATAAACATTCTGCAGACCAGCCCATAGTTGCAGG
CTGTGTCTTTTGTAATGCTTAATTAGTTACTGAATAGGTAACTTCCTTAC
TGAATTCCAAGTTGTCAGCTTCAAGGTCTTTCTAGGACATTGGAACGTTG
GCCAATGCTTAACTATATCAGAATTCAATCTTATAAAACACTTATAATAA
GATAACACTAAAGGAGAGCACGTGCATCCATACACCAGACTAACGTGGGG
ATAGGTTAACAATGTACGGCTTATAAAATGCTTAAGTTCTATGATGTGAG
TTTTCGTGAATCTCTTTGTCTGGTGAGTGCTCTCCAAGCTTTTCAACCTG
CCTAGCACACTTCTATGAAAAGTGTAAATTAATTTACCCATTCTCATATT
TTTGTCGGATTTCCGGAATGTCTTGCTTCAAACTAACCATAAGTTCTTAA
GCATTATTTAAAAAATAGAAACGACAAACTCCCCCCTTCTCTTACTCTCC
CCCCGCCCTTTTTTATTTCCTAGCTTCTTCCCTTTTTTTGTTCCCTTTAC
TCTCTCTCATTCTCTGTATTCACATTTGTCTTTTTATATCTTTTCTTCCT
CC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAC
AAAAACAACCCATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGAGCAGAAGGAGAAAGA
GTAAGAAGGTCAGATATAATAGAATAAATATGTACACCAAGACCAACTGA
AAAGCAGTCATGCACAAATAAAATGGAAATGATTGTTTTTTTACAAAGAG
CTGCCAGGGTCTACTGAGATGTCTCCATCCCGGCCAACTCCAGGACGTCC
CTGTCATTGTATGCTGTCCCCAGCAACAAACACTATCAGGGCAAATTCCA
AACTTTGCAAATTCATGTCTGATGTCTTTGTGCTCTTTGAAACTCCAACT
CTTTCCAGATTTTTAGACTTTAACATTTTTTTTCTCTCTAAAAAATTTGT
TCATTCCAATCTGTAGCACCTTTCTGCAGGTTTTCCTTGACAATGAAATC
ATCTGACACTCCCTCGATAATTCATTTTCCTACCCAATGTAATGAGCCTC
CGCGAACCTTCTATGCCCTGAACCTAATGGGCACCCTCCTTGATCTTTAG
AAAGGTTTCCTTTATTATTCGTATAATAAATCCTTAACCTCACTTTCTCA
CGGTTTCCTAGCATCCAAGGGTCTAATACCCCGATGTTCATAAGCTACCA
TGGGTTCTTGCGGGTTACGAATTTGGATCACAATCTTCGTACTCATCTTA
CTCCCTACCATCTTGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_e04.g1 MSMg01no045_e04.g1 CHROMAT_FILE:
MSMg01no045_e04.g1 PHD_FILE: MSMg01no045_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:10 2005
         (191 letters)



>mm_chr1_114559969_114560560
          Length = 592

 Score =  325 bits (168), Expect = 1e-93
 Identities = 186/192 (96%), Gaps = 1/192 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagcagaaggagaaag-agtaagaaggtcagatataatagaataaatatgtacaccaag 59
           ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 agagcagaaggagaaagaagtaagaaggtcagatataatagattaaatatgtacaccaag 260

                                                                       
Query: 60  accaactgaaaagcagtcatgcacaaataaaatggaaatgattgtttttttacaaagagc 119
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 accaactgaaaagcagtcatgcacaaatgaaatggaaatgattgtttttttacaaagagc 320

                                                                       
Query: 120 tgccagggtctactgagatgtctccatcccggccaactccaggacgtccctgtcattgta 179
           |||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||
Sbjct: 321 tgccagggtctactgagatgtctccatctcagccaactccaggaagtccctgtcattgta 380

                       
Query: 180 tgctgtccccag 191
           ||||||||||||
Sbjct: 381 tgctgtccccag 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 592
Length adjustment: 8
Effective length of query: 183
Effective length of database: 584
Effective search space:   106872
Effective search space used:   106872
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)