BAC Information

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BAC

Clone NameMSMg01-045G24
Chromosome1 (Build37)
Map Location 100,220,126 - 100,220,498
singlet/doubletsinglet
Overlap genenone
Upstream geneEG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823, LOC666153, LOC100040887
Downstream geneSlco6d1, LOC100041868, EG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045G24.T7 (MSMg01no045_g24.b1)MSMg01-045G24.TJ (MSMg01no045_g24.g1)
ACCAG276071AG276072
length754767
length of high quality
(start - end)
372 (125 - 496)249 (133 - 381)
definitionCHROMAT_FILE: MSMg01no045_g24.b1 PHD_FILE: MSMg01no045_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:23 2005CHROMAT_FILE: MSMg01no045_g24.g1 PHD_FILE: MSMg01no045_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTNNNNNNNNNCCCCNNGGCCGNNGNNNNGNTTTGTTCCATTTCCCNC
CCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGAGCGCG
GAATTCTTATACGTTAGCCCTAGCTCATAAACCCTACACCTCCTTTTATT
TCTATTCTGGTATATTACTCCTTAGAGCTTGATTCTAGACTATATTCTTA
GAGGAAATGTTTAAATCTATAAAGCATTGTCTTTCCAAGTCCATAATATA
CTTGGTAAAACTATCAAATATCAACTGAGCAAATTCCACATACTATTAAA
TATAAATTTTAACCAACTCCATATCTTCATGATATTTAAGTTATTTTCCC
ATGCACATAGCTCCATGATAGGCATCCTTATGAATATTTACATGCATTTG
CATAATTACATTGTTGACAAAATATTTTAGAATTATAATTAATGAATTAG
AATATATGCAAAATTCCAAGTTTTAAAAAAATAATCATTGCCAAGTTACA
GAAAGTTTATACTAATTTAAATTTCCTGAAAGCATGTGCAAATGTAATAA
TTTTCTGGCTCTATTCTTGCTCACCAATGCAACCTATCAGATCCTCATTT
TTGCAAGTGGTTTTGGTCCTTAGTAACTGCCATCAACTACAGGTTAGTAT
CCCAAGAGCCAACTGAAGATACTACTAAATAGTCCCCTATAAAGATCTGC
TATATTTCATCAACATGGGTTTGCTATTTTACGTCTTAAATGTATCTACT
TCTG
NNNNNNNNNNNNNNNNNNNCCCAAAANNNNNNCCCCNNNNNNNNNCCAAA
CACANNCTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGA
ATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGT
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACT
CTGGAAATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGG
AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACT
GGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATAC
TCAAAACGTGGCACATCTACACAATGGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTCCTAGCCAAATGAACGGACCTGCGAGGGCATCA
TCCCGAGTGAGGTAACAAATTCCCCAAGGGATCTCCCCTATATTGTTACT
CCCTGAAAAAGTGTATATTATCCCAAAACCTAGGATACCCAATAAAATAA
AAAACAATTTCCCTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_g24.b1 MSMg01no045_g24.b1 CHROMAT_FILE:
MSMg01no045_g24.b1 PHD_FILE: MSMg01no045_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:23 2005
         (372 letters)



>mm_chr1_100219926_100220698
          Length = 773

 Score =  698 bits (361), Expect = 0.0
 Identities = 370/373 (99%), Gaps = 1/373 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcataaaccctacacctccttttatttctattctggtatattactccttagagcttgatt 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 573 tcataaaccctacacctccttttatttctattctggtatattattccttagagcttgatt 514

                                                                       
Query: 61  ctagactatattcttagaggaaatgtttaaatctataaagcattgtctttccaagtccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ctagactatattcttagaggaaatgtttaaatctataaagcattgtctttccaagtccat 454

                                                                       
Query: 121 aatatacttggtaaaactatcaaatatcaactgagcaaattccacatactattaaatata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aatatacttggtaaaactatcaaatatcaactgagcaaattccacatactattaaatata 394

                                                                       
Query: 181 aattttaaccaactccatatcttcatgatatttaagttattttcccatgcacatagctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aattttaaccaactccatatcttcatgatatttaagttattttcccatgcacatagctcc 334

                                                                       
Query: 241 atgataggcatccttatgaatatttacatgcatttgcataattacattgttgacaaaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 atgataggcatccttatgaatatttacatgcatttgcataattacattgttgacaaaata 274

                                                                       
Query: 301 ttttagaattataattaatgaattagaatatatgcaaaattccaagttttaaaaaaa-ta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 273 ttttagaattataattaatgaattagaatatatgcaaaattccaagtttaaaaaaaaata 214

                        
Query: 360 atcattgccaagt 372
           |||||||||||||
Sbjct: 213 atcattgccaagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 773
Length adjustment: 9
Effective length of query: 363
Effective length of database: 764
Effective search space:   277332
Effective search space used:   277332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)