BAC Information

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BAC

Clone NameMSMg01-045I22
Chromosome1 (Build37)
Map Location 181,070,768 - 181,071,195
singlet/doubletsinglet
Overlap geneSmyd3
Upstream geneLOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik, Kif26b
Downstream geneLOC666354, LOC433941, Tfb2m, LOC100040874, 9630058J23Rik, Sccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190, Cdc42bpa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045I22.T7 (MSMg01no045_i22.b1)MSMg01-045I22.TJ (MSMg01no045_i22.g1)
ACCAG276161AG276162
length657737
length of high quality
(start - end)
244 (46 - 289)428 (126 - 553)
definitionCHROMAT_FILE: MSMg01no045_i22.b1 PHD_FILE: MSMg01no045_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:32 2005CHROMAT_FILE: MSMg01no045_i22.g1 PHD_FILE: MSMg01no045_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATATTCATAAGATGCGCGGAATTCCTAAACTTCCACCTTGTCAACTTG
AGACATGGTCAGCCCCCTTCTCTGTCTCTCTCTCTCACTCTATGTGTGTG
CTCATGCATGTGTGCATGTGTGCAGAGGTCAGAGACCAACATGTCTTTCA
GCCACTTTCCACTTTAATTTTTGAGACAAAGTCTTTCAGTGATTGCCCAG
GCCAGTGAGCTCCAGAGACCACATCCCTGTCCCTGCCTACCCATCACTGG
GATTACAAGTGCATACCAGTACTCTGGGTAGTTACTGGAGATCTGAACTC
AGGCCCTCATGCTTGAGTAGTAAGACTGATCATCGCCCTACCCCCAACAT
ATGAGATTCCTTTAAGATGAATTTTTACAATAGATTCAGGAAATGGAGAG
TCATATCTTCCCTAGAATTACAGATGAGCTAGGACTGAGTAGAGTGCCTG
ACTAGCATCACCAATCAGGACCGAGGACAGTACCTGAGGATGGCAATCAC
CACCATCAGGAGTGGGACACACAGCTAAACTGTGGTAACCTCTGCTTCTC
TAGAATCTGGGGGCACAGGTGCTGGGGCTGGACCCCTGTGTTGTGTTGCT
GGTGGGCTGCAGGAAGCAGCCCTTTCTGCTCTTTCCAGCCAGACCAACCC
CTGGTAC
TGGGGTTGGGGTGGGTGGGGGGGCTGGGTGNCGNCCNNNNGCNCAACAAN
NNNCCCGATGACATGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTGTTTGGAACTGACCCGGCCCTA
ACAATGGTTCTGTGGGGGCCTCACATGGCATCATCTCTGTTCCCTCTGTC
AGATGAACAGGACACTAGACCTTTCTTTCCTCAGACTGGGCTGTGAATAT
GTTGCCGAGTATCACAGGGAGTCAGAAAACTGACCTCTTCTTGGCTAGGA
TGCAGTGAAGCAGTGGCCTGCACCTCCCGGCTATGTGCAGTATGCATGCT
ACCATCTCGTTTCCCAGCTCTCTGTGTATTGCAAGCTCAGTGAGAGGATT
TAAGAAGCACTCATTGCTACTATGTGATACCAAGCACGCCCTTTGATGAC
CCGCAGTTTACCCGTCAAGACAAACTTAGTGATTTATCAACCATCAACGT
GATACTCTCAGGCAATGTGCCTGAGATCTCTGTTATCTTGGTTAGTGAAT
AGCCTAGACATGAAATTCCTTAATTTGACTGTGTTGATAAATAAACGGTT
TATTGTTTAAGGGGGGGTACACCTCTTTCCCCCCTCTCCCCCAAGAAAGT
CTTTAAGGTTTGGGAATATTCATGTCCTCCTTGAGTGGGACCCTCTGGGA
AGTAGCAGGGAAAAATGGAAAGCGAGAACCCTGAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_i22.g1 MSMg01no045_i22.g1 CHROMAT_FILE:
MSMg01no045_i22.g1 PHD_FILE: MSMg01no045_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:32 2005
         (428 letters)



>mm_chr1_181070568_181071395
          Length = 828

 Score =  781 bits (404), Expect = 0.0
 Identities = 422/428 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgtttggaactgacccggccctaacaatggttctgtgggggcctcacatggcatcatc 60
           ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 628 tgtgtttggaactgacccgaccctaacaatggttctgtggcggcctcacatggcatcatc 569

                                                                       
Query: 61  tctgttccctctgtcagatgaacaggacactagacctttctttcctcagactgggctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tctgttccctctgtcagatgaacaggacactagacctttctttcctcagactgggctgtg 509

                                                                       
Query: 121 aatatgttgccgagtatcacagggagtcagaaaactgacctcttcttggctaggatgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aatatgttgccgagtatcacagggagtcagaaaactgacctcttcttggctaggatgcag 449

                                                                       
Query: 181 tgaagcagtggcctgcacctcccggctatgtgcagtatgcatgctaccatctcgtttccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tgaagcagtggcctgcacctcccggctatgtgcagtatgcatgctaccatctcgtttccc 389

                                                                       
Query: 241 agctctctgtgtattgcaagctcagtgagaggatttaagaagcactcattgctactatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 388 agctctctgtgtattgcaagctcagtgagaggatttaagaagcactcattgatactatgt 329

                                                                       
Query: 301 gataccaagcacgccctttgatgacccgcagtttacccgtcaagacaaacttagtgattt 360
           |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 328 gataccaagcacgccctttgatgacctgcagtttacctgtcaagacaaacttagtgattt 269

                                                                       
Query: 361 atcaaccatcaacgtgatactctcaggcaatgtgcctgagatctctgttatcttggttag 420
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 atcaaccatcagcgtgatactctcaggcaatgtgcctgagatctctgttatcttggttag 209

                   
Query: 421 tgaatagc 428
           ||||||||
Sbjct: 208 tgaatagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)