Query= MSMg01no045_o10.b1 MSMg01no045_o10.b1 CHROMAT_FILE:
MSMg01no045_o10.b1 PHD_FILE: MSMg01no045_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:58 2005
(557 letters)
>mm_chr1_8040299_8041255
Length = 957
Score = 1062 bits (549), Expect = 0.0
Identities = 555/557 (99%)
Strand = Plus / Plus
Query: 1 caacttgtcctggccattcttttagtttggagatttaatgtctgttgctatttctttagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caacttgtcctggccattcttttagtttggagatttaatgtctgttgctatttctttagg 260
Query: 61 aactatgggactgtttagatgttttatctaatcctgatttaactttggtacctagtatct 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 aactatgggactgtttagatgttttatccaatcctgatttaactttggtacctagtatct 320
Query: 121 gtctagcaaattatccatttatcccaatttaacagttttgttaagtataagcttttattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctagcaaattatccatttatcccaatttaacagttttgttaagtataagcttttattg 380
Query: 181 taggatcagatttttgttttaatttcgtcagtttctgcttttatatctccattttctttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggatcagatttttgttttaatttcgtcagtttctgcttttatatctccattttctttc 440
Query: 241 ctggttttaggttggatactctgtctgtgtcctttggtaagtctggctaaggggtttatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggttttaggttggatactctgtctgtgtcctttggtaagtctggctaaggggtttatc 500
Query: 301 tgtcttgttgattttctcagagaaccagctcctggttttgtcgcttctttgtatagttct 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtcttgttgattttctcagataaccagctcctggttttgtcgcttctttgtatagttct 560
Query: 361 ttttgtttctacttgattgatttcagctctaagtttgattatttcctgccacccactcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttgtttctacttgattgatttcagctctaagtttgattatttcctgccacccactcct 620
Query: 421 ctttttgacattatatagaggtctaattcagagtgtcttttcctctgagggctttgactt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttttgacattatatagaggtctaattcagagtgtcttttcctctgagggctttgactt 680
Query: 481 ggagatgttttttgtcattttgtattcaatcccttccctttacttgtcagacgttttaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggagatgttttttgtcattttgtattcaatcccttccctttacttgtcagacgttttaag 740
Query: 541 gagcacatgggctatgt 557
|||||||||||||||||
Sbjct: 741 gagcacatgggctatgt 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_o10.g1 MSMg01no045_o10.g1 CHROMAT_FILE:
MSMg01no045_o10.g1 PHD_FILE: MSMg01no045_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:58 2005
(415 letters)
>mm_chr1_8122212_8123026
Length = 815
Score = 772 bits (399), Expect = 0.0
Identities = 411/415 (99%)
Strand = Plus / Minus
Query: 1 attctcttcatgtactattcatgaacattttggttttcataagaccattactatattcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 attctcttcatgtactattcatgaacattttggttttcataagaccattactatattcct 381
Query: 61 cctctcattaaaaacattactttatagaaattttaccattttcactttcacatttatttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cctctcattaaaaacattactttatagaaattttaccattttcactttcacatttatttt 321
Query: 121 tgcagtcaatctgtgtgatttttgtacatggaaatgaatgcatggtagttgtttttgtcc 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 320 tgcagtcaatctgtgtgatttttgtacatggaaatgaattcatggtagttgtttttgtcc 261
Query: 181 caatggattgatggaagaaatagttttaaaaatattgttctgtgttcactggtttatagg 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caatggattgatggtagaaatagttttaaaaatattgttctgtgttcactggtttatagg 201
Query: 241 gtcttactaaggaaaacaaagatttttctttcacacatttgggcaatagaagggtagaaa 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 200 gtcttactaaggaaaacaaagatttttctttcacacatttgggcaataaaagggtagaaa 141
Query: 301 cttttactttctttatgcaataaagatagtagctcacttttcattcagaatgagtgagtt 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 catttactttctttatgcaataaagatagtagctcacttttcattcagaatgagtgagtt 81
Query: 361 ctttctgcactggcatttgagttttcggtccatacgcatatataagtatgattgt 415
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 ctttctgcactggcatttgagttttcggtccatacgcatatataagtatgattgt 26
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space: 327236
Effective search space used: 327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
