Query= MSMg01no046_a14.b1 MSMg01no046_a14.b1 CHROMAT_FILE:
MSMg01no046_a14.b1 PHD_FILE: MSMg01no046_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:08 2005
(470 letters)
>mm_chr1_65044203_65045072
Length = 870
Score = 872 bits (451), Expect = 0.0
Identities = 467/473 (98%), Gaps = 3/473 (0%)
Strand = Plus / Plus
Query: 1 tttgcttgtcca-caactcccaagaagcgactgaactcagtaagccactcacaggaacca 59
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tttgcttgtccaacaactcccaagaagcgactgaactcagtaagccactcacaggaacca 257
Query: 60 cagcaaatacctgtctgttgtcgtcctctagcagactagatgagcttaacatagaaaaat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cagcaaatacctgtctgttgtcgtcctctagcagactagatgagcttaacatagaaaaat 317
Query: 120 ccccctgggtttcttgccccttcattgtgggtctgtttgtattttcgcattcccagtatt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ccccctgggtttcttgccccttcattgtgggtctgtttgtattttcgcattcccagtatt 377
Query: 180 tcagctgtgaccttcattctttggcaatttctctcctagtccacatgtttagcattctgg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tcagctgtgaccttcattctttggcaatttctctcctagtccacatgtttagcattctgg 437
Query: 240 cccaggggcctctccttggatctccttgctacactgctattattcttcccatctttgact 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cccaggggcttctccttggatctccttgctacactgctattattcttcccatctttgact 497
Query: 300 tcatggctccttcttcctcattctctgtctctgtctctgtctctctctctgtctctctct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tcatggctccttcttcctcattctctgtctctgtctctgtctctctctctgtctctctct 557
Query: 360 ctctgt--gtctgtctgtctctcactttgtatgtgtgttctcatccatgcatattatatc 417
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 558 ctctctctgtctgtctgtctctcactttgtatgtgtgttctcatccatgcatattatacc 617
Query: 418 tgccatttcctgatttgaggtgaattgacattggggtgagaagggaaatatgt 470
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgccatttcctgatttgaggtgaattgacattggggtgagaagggaaatatgt 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no046_a14.g1 MSMg01no046_a14.g1 CHROMAT_FILE:
MSMg01no046_a14.g1 PHD_FILE: MSMg01no046_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:08 2005
(590 letters)
>mm_chr1_65166598_65167587
Length = 990
Score = 1141 bits (590), Expect = 0.0
Identities = 590/590 (100%)
Strand = Plus / Minus
Query: 1 agtttacaccctgcccatgtgttatcctcctgctaggagggatgtgtctcttttcctcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 agtttacaccctgcccatgtgttatcctcctgctaggagggatgtgtctcttttcctcag 731
Query: 61 tttccctctgagtaacgccaagtttgtagctaagcctgcctctctgtgtgcccacatcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 tttccctctgagtaacgccaagtttgtagctaagcctgcctctctgtgtgcccacatcac 671
Query: 121 gaagaggcatcaaacagatcattactggacttctcaaactttaatgaggtattgttacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gaagaggcatcaaacagatcattactggacttctcaaactttaatgaggtattgttacag 611
Query: 181 cgccatttctattctggaggtcaaggctggctttgtatttctagtgagcacgaccagtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 cgccatttctattctggaggtcaaggctggctttgtatttctagtgagcacgaccagtgt 551
Query: 241 gactaacccaggcatcaaactccagatgaggtttcaacagaatgaccagggtccaaaacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gactaacccaggcatcaaactccagatgaggtttcaacagaatgaccagggtccaaaacc 491
Query: 301 cttatttattatttaggctggcatttattctctggagaatgtcattacatgattgaggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 cttatttattatttaggctggcatttattctctggagaatgtcattacatgattgaggaa 431
Query: 361 ttcttagaaccttaaacgaacccagatctacctttgtttgcccagatgaggggtggaaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ttcttagaaccttaaacgaacccagatctacctttgtttgcccagatgaggggtggaaag 371
Query: 421 aaaatgttacaaataagtggtaagcatatttactaagtaaaaagttacaaacaaccaagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaatgttacaaataagtggtaagcatatttactaagtaaaaagttacaaacaaccaagg 311
Query: 481 aaaaggtcatcactgtagtaagaatcaacatgcaaattgactctcagttttgtaccaggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aaaaggtcatcactgtagtaagaatcaacatgcaaattgactctcagttttgtaccaggt 251
Query: 541 gtgacagcaatggagctgtcagtcacctctgtctgacagctccattgctc 590
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gtgacagcaatggagctgtcagtcacctctgtctgacagctccattgctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
