BAC Information

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BAC

Clone NameMSMg01-046C05
Chromosome1 (Build37)
Map Location 124,645,587 - 124,789,666
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666971
Downstream geneLOC666983, Dpp10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046C05.T7 (MSMg01no046_c05.b1)MSMg01-046C05.TJ (MSMg01no046_c05.g1)
ACCAG276589AG276590
length688676
length of high quality
(start - end)		477 (36 - 512)430 (56 - 485)
definitionCHROMAT_FILE: MSMg01no046_c05.b1 PHD_FILE: MSMg01no046_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:15 2005CHROMAT_FILE: MSMg01no046_c05.g1 PHD_FILE: MSMg01no046_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,645,587 - 124,646,060)(124,789,237 - 124,789,666)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTAA
CATTACAGAAAATAGTATGTTTAATGTTAAGTTGTTAGATATCTTGTAGA
GCCCTATGCAAAGAAAATAGATGGTTAGCAGAAAAAATAAAAGAAGAAGC
TTTAATTATATACAGTCATGCTATCTCTATGCTGGGTAGATAGCTCAATG
AGCTAAAGTCTTCCCAGGCAAGCATGTTTACCTGGGTTCAAATCCCTAAA
ATCCATTTAAAAATGGCCATAGAATTCAATGCCTATGATTTGAAAGCTGT
GCCATAAACAGCAGGAATTCAACTGCCTACTCATGTCCAGGTAGCTTGGC
ATATGCACCACTGGATGAGAAAGTCTGTCTCTAACAGGATGGAAGCAGAA
TGCCAACACCCAAGATTGTCTTCTTAACTTCACTCATACCTCCCCATATA
TATGACCCTCTCTTTCAGATACAAACCTACCACACAGACTTCTTGCCAGA
GACTATGAATGTAAGAAGACCTGGGAAGATGCCATACAGACCCTAAGAGA
ACACACATGCCAGCCCAGGATACTATAACCAGCAAAATCTCAGTTGCCAT
TGATGGATAAAGCAGGGCATTCAATGAAAAAACCAAATTTACACAATATC
TTTACAAAAATCCAGGCCTTCCAAGTATTAATAAATGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCTACAGTCACCAAGCTCCTTTACTGATGATACTCTTCAAGAATG
GCTTTTCCTTCCCCATTTCAGAAAACCACCCAGGAACTTGACTACTGCCC
AGTGTCCTGATTATCATTGGTTCACTCTTACTAAAGACTAACAATTATGA
AGGAGATGGACTTACCTTGCATGGCACTACAGGATGGGAGACCTGAACTG
AAAGGAGCCTACACTTGAGTCAAGGGAAACATGATCCACATAACTACCAA
GCACCGCATGCTGGTGGAAGAGGGTCAGCGAACCATCTGAAACATACCCT
ATTCAAAGAGATTGGTGAGGAAGAGTATCCCAGCTACATTAACAAAGGCT
TGGGGTGATGCCAAAATGGAGTCATTAAAGCCTATCCAGAGAATAGATGA
GGGATTGTAAGCATAATCTCTGAAAACAATCAAAAAGCAAAATATAGCAT
AAAACACAGCCATTGTGGCCAGATAGATGGCTCAGCAGCTAAGAGCACAT
ACTGCTCTTGCAGAGGATCTTATTTCAGTTTTCAGTACCCAAACTAGGGA
TTTTTCCAACTGCCTGTAGATGTTCCCAACCATCTTCTGGTCTCTGAAGG
AATTGTACTCACATGCACATATTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_c05.b1 MSMg01no046_c05.b1 CHROMAT_FILE:
MSMg01no046_c05.b1 PHD_FILE: MSMg01no046_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:15 2005
         (477 letters)



>mm_chr1_124645384_124646260
          Length = 877

 Score =  917 bits (474), Expect = 0.0
 Identities = 474/474 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattaacattacagaaaatagtatgtttaatgttaagttgttagatatcttgta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattaacattacagaaaatagtatgtttaatgttaagttgttagatatcttgta 263

                                                                       
Query: 64  gagccctatgcaaagaaaatagatggttagcagaaaaaataaaagaagaagctttaatta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gagccctatgcaaagaaaatagatggttagcagaaaaaataaaagaagaagctttaatta 323

                                                                       
Query: 124 tatacagtcatgctatctctatgctgggtagatagctcaatgagctaaagtcttcccagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tatacagtcatgctatctctatgctgggtagatagctcaatgagctaaagtcttcccagg 383

                                                                       
Query: 184 caagcatgtttacctgggttcaaatccctaaaatccatttaaaaatggccatagaattca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caagcatgtttacctgggttcaaatccctaaaatccatttaaaaatggccatagaattca 443

                                                                       
Query: 244 atgcctatgatttgaaagctgtgccataaacagcaggaattcaactgcctactcatgtcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atgcctatgatttgaaagctgtgccataaacagcaggaattcaactgcctactcatgtcc 503

                                                                       
Query: 304 aggtagcttggcatatgcaccactggatgagaaagtctgtctctaacaggatggaagcag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aggtagcttggcatatgcaccactggatgagaaagtctgtctctaacaggatggaagcag 563

                                                                       
Query: 364 aatgccaacacccaagattgtcttcttaacttcactcatacctccccatatatatgaccc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aatgccaacacccaagattgtcttcttaacttcactcatacctccccatatatatgaccc 623

                                                                 
Query: 424 tctctttcagatacaaacctaccacacagacttcttgccagagactatgaatgt 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tctctttcagatacaaacctaccacacagacttcttgccagagactatgaatgt 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no046_c05.g1 MSMg01no046_c05.g1 CHROMAT_FILE:
MSMg01no046_c05.g1 PHD_FILE: MSMg01no046_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:15 2005
         (430 letters)



>mm_chr1_124789037_124789866
          Length = 830

 Score =  731 bits (378), Expect = 0.0
 Identities = 417/430 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctacagtcaccaagctcctttactgatgatactcttcaagaatggcttttccttcccca 60
           |||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 630 tctacattcaccaagctcctttactgatgatactcttcaaggatggcttttccctcccca 571

                                                                       
Query: 61  tttcagaaaaccacccaggaacttgactactgcccagtgtcctgattatcattggttcac 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 570 tttcagaaaaccacccagggacttgactactgcccagtgtcctgattatcagtggttcac 511

                                                                       
Query: 121 tcttactaaagactaacaattatgaaggagatggacttaccttgcatggcactacaggat 180
           |||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 510 tcttactacagactaacaattatgaaggagatggacttaccttacatggtactacaggat 451

                                                                       
Query: 181 gggagacctgaactgaaaggagcctacacttgagtcaagggaaacatgatccacataact 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 450 gggagacctgaactgaaaggagcctacacttgagttaagggaaacatgacccacataact 391

                                                                       
Query: 241 accaagcaccgcatgctggtggaagagggtcagcgaaccatctgaaacataccctattca 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 390 accaagcacagcatgctggtggaagagggtcagcgaaccatctgaaacatatcctattca 331

                                                                       
Query: 301 aagagattggtgaggaagagtatcccagctacattaacaaaggcttggggtgatgccaaa 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 330 aagagattggtgaggaagagtatcccagctacattaacaaacgcttggggtgatgccaaa 271

                                                                       
Query: 361 atggagtcattaaagcctatccagagaatagatgagggattgtaagcataatctctgaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atggagtcattaaagcctatccagagaatagatgagggattgtaagcataatctctgaaa 211

                     
Query: 421 acaatcaaaa 430
           ||||||||||
Sbjct: 210 acaatcaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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