CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTCAATTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTG
GAGTCCAACCTCTTCAGTTCTTTATATATATTGGATATTAGTCCCATATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTG
TCTTATTGACAGTATCTTTTGCCGAGCAGAAGCTTTGCAGTTTCATGAGG
TCCAATTTGTCGATTCTCAATCTTGCAGCACAAGCCATTGCTGTTCTATT
CAGGATTTTTTCCCCTATGCCCATACCTTCGAAGCTTTTCCCCACTTTCT
CCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCAC
TTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCGATTCACATTCT
TCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGT
CTTTCTTCCAGTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGGCCA
TAAGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTAC
TTGTCTGTCACTATACCAGTACCATGCGGGTTTTTTTTTGTTTTTTCGTT
CTTGCTTTTA

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTGTATTGAGTGAAGGAGCAAGGTAC
TTAGACTTCATATGTCACTATATACTAGTTAAAATATGATCAAATTCACC
AATACATTTTTTAAAGATGCCACATTTATTTTGAGTAATTTCACTTCTTC
AGATGGAAAAGATTGTTATTAAAAAAAGTAATCTGGATCATATATTTGCT
AACTATATTTTGCATGTCCCAGCTTATGTGTAGTCACTAATGATATTTTA
TACTGGGACAAGAAATGTTAGTTCTGTTAAATCAAAACATATTTCACTTG
AGAACCTTCATTCTCATCTCGTCTCTGTCGCCTTTCAGTTTTTAAGCCAG
AAGTATTTTAGAAAAAAAAATATGTTGATCCTTTTACCTTTTGTTAATCA
GTACACAGAGACACAGCACATGTTTAGGCACATTCGTGTGCAGGCAACTT
AATACAAAGTGCCCTCTATCTCCATCTTATGCTGTTTTACTAGGCATCAG
TGGCTAGCTAGATATAGCTGTAGGCAGCTGAAACCTCTAAGAGCATACCT
ATGCTATTAGCAGGTCAAGTGTAACCAAAGTCTGTACATTTAATTCATAC
TTACAAGTTAGCTGT

Query= MSMg01no046_d02.g1 MSMg01no046_d02.g1 CHROMAT_FILE:
MSMg01no046_d02.g1 PHD_FILE: MSMg01no046_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:18 2005
         (541 letters)



>mm_chr1_81351351_81352294
          Length = 944

 Score = 1009 bits (522), Expect = 0.0
 Identities = 538/544 (98%), Gaps = 3/544 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgtattgagtgaaggagcaaggtacttagacttcatatgtcactatatactagttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgtattgagtgaaggagcaaggtacttagacttcatatgtcactatatactagttaaa 260

                                                                       
Query: 61  atatgatcaaattcaccaatacattttttaaagatgccacatttattttgagtaatttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatgatcaaattcaccaatacattttttaaagatgccacatttattttgagtaatttca 320

                                                                       
Query: 121 cttcttcagatggaaaagattgttatt--aaaaaaagtaatctggatcatatatttgcta 178
           |||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||
Sbjct: 321 cttcttcagatggaaaagattgttattaaaaaaaaagtaatctggatcatgtatttgcta 380

                                                                       
Query: 179 actatattttgcatgtcccagcttatgtgtagtcactaatgatattttatactgggacaa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actatattttgcatgtcccagcttatgtgtagtcactaatgatattttatactgggacaa 440

                                                                       
Query: 239 gaaatgttagttctgttaaatcaaaacatatttcacttgagaaccttcattctcatctcg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaatgttagttctgttaaatcaaaacatatttcacttgagaaccttcattctcatctcg 500

                                                                       
Query: 299 tctctgtcgcctttcagtttttaagccagaagtattttagaaaaaaaaa-tatgttgatc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 tctctgtcgcctttcagtttttaagccagaagtattttagaaaaaaaaaatatgttgatc 560

                                                                       
Query: 358 cttttaccttttgttaatcagtacacagagacacagcacatgtttaggcacattcgtgtg 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttttaccttttgttaatcagtacacagagacacagcacatgtttaggcacattcgtgtg 620

                                                                       
Query: 418 caggcaacttaatacaaagtgccctctatctccatcttatgctgttttactaggcatcag 477
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caggcaacttaatataaagtgccctctatctccatcttatgctgttttactaggcatcag 680

                                                                       
Query: 478 tggctagctagatatagctgtaggcagctgaaacctctaagagcatacctatgctattag 537
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 681 tggctagctagatatagctgtaggcagctgaaacctctgagagcatacctatgctattag 740

               
Query: 538 cagg 541
           ||||
Sbjct: 741 cagg 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 944
Length adjustment: 10
Effective length of query: 531
Effective length of database: 934
Effective search space:   495954
Effective search space used:   495954
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)