XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCAA
TGGTGACTATGAATATGGTAGTGAATATGTCTGTGTGTCTCCACAGCAAC
CACTGAAGGACCCACATACTTGCCTAAATCTGGTTTCCTTTTTAAAAGTG
CCTCCAGATTCTTGAATATTTTTCTAAGGGAAGGGATTTTTATCCCCGGC
TGAACATCAAAAGCAAAAGAGATTTTGAAGTCCACAACTAGGTCCTAACC
ATGAGCTCTATATGCAATTATTACTTTATAAAACCAAAAGAGAGTGAAGT
TCAAGTGCCAAAGAAATAGTTCTTTAATTAAGTTGGAGAGACAGGTGAAA
TAACAAATAGGCACGCCCCTTTACACTGGGTCTCAGGGCAAGTGTGGGAG
CTTTTCTATTTTTTTTCTTTATTGGATATTTTCTTTATTTAAATTTCTAA
TGTTATCTCCTTTCATTCATTCCCTCCAGGAAACCCCCTATCCCATCCTC
CCTCCCCCTGCTTCTATGAGGGTGTTCCTCTACTCACTAACCCACCCCCA
CCTCCCTGCCCTTGATTCCCCTACACTGGGGCATCTATAGAGCCTTCATA
AGACCAAGTTTCTCTCTTTCCATTGATGAATGGCAAGACCATCCTCTACT
TCATATGTAGCTGGAGTCAGGTGTACT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXACCCAAATCATTTCATTGGAAATCAATTAGCATTTTCATTTAC
TTTGTTCTGATAAAGCAAAAGCCCACACATTCTCTCTAAAAGGACATTTC
CAGACATGCCATATAAATTATTAAAAAGAAAAAAGCATTACAGAGTAATT
AGGTTAAGTCTATTTCCTCACTCCTCCCTCCAGCTACCTCCTTTCCAAAT
AGATTACTTTTCAAAAAAAAAGTAACAGTTATTCAAAACAAAATATGTTG
GTTTGTCTTACAGCCAAATGAAATGGATCTGCATTGCACAGTGATATAAG
CCAACCTCAAATTGATACATTTATCAAGTAAAGGGGAACAAAAGCATAGC
TTAAGCAGCTCTGTTGATCATTTAAAAAATGTTAATAGTAAAATGCTTTA
AAAAAACACTATTTAGATACTTATGACTAATGTCGCAATGTTAGTTAAAT
TCAAAACATTCATTAATTTCAGCTGGCTTTCATCGTTGTGAAAAATAACT
CATAAGAAACTTCAATAATTTTCAAAAGCAACATAAATAATAATACCCAT
GTGCTAATCCACCCAGGAAGCCCCTTCCCCAGACTTGGAGTTTTGCCAAT
AAACTCCTCAAAGGGGCTGAG

Query= MSMg01no046_d06.b1 MSMg01no046_d06.b1 CHROMAT_FILE:
MSMg01no046_d06.b1 PHD_FILE: MSMg01no046_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:19 2005
         (621 letters)



>mm_chr1_19706718_19707738
          Length = 1021

 Score = 1131 bits (585), Expect = 0.0
 Identities = 609/617 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcaatggtgactatgaatatggtagtgaatatgtctgtgtgtctccacagcaa 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcaatggtgagtatgaatatggtagtgaatatgtctgtgtgtctccacagcaa 264

                                                                       
Query: 65  ccactgaaggacccacatacttgcctaaatctggtttcctttttaaaagtgcctccagat 124
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 265 ccactgaaggacccacatacttgcctaaatctggtttcctttttacaagtgcctccagat 324

                                                                       
Query: 125 tcttgaatatttttctaagggaagggatttttatccccggctgaacatcaaaagcaaaag 184
           |||||||| ||||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct: 325 tcttgaatgtttttctaagggaggggatttttatccctggctgcacatcaaaagcaaaag 384

                                                                       
Query: 185 agattttgaagtccacaactaggtcctaaccatgagctctatatgcaattattactttat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agattttgaagtccacaactaggtcctaaccatgagctctatatgcaattattactttat 444

                                                                       
Query: 245 aaaaccaaaagagagtgaagttcaagtgccaaagaaatagttctttaattaagttggaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaaccaaaagagagtgaagttcaagtgccaaagaaatagttctttaattaagttggaga 504

                                                                       
Query: 305 gacaggtgaaataacaaataggcacgcccctttacactgggtctcagggcaagtgtggga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacaggtgaaataacaaataggcacgcccctttacactgggtctcagggcaagtgtggga 564

                                                                       
Query: 365 gcttttctattttttttctttattggatattttctttatttaaatttctaatgttatctc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcttttctattttttttctttattggatattttctttatttaaatttctaatgttatctc 624

                                                                       
Query: 425 ctttcattcattccctccaggaaaccccctatcccatcctccctccccctgcttctatga 484
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctttcattcactccctccaggaaaccccctatcccatcctccctccccctgcttctatga 684

                                                                       
Query: 485 gggtgttcctctactcactaacccacccccacctccctgcccttgattcccctacactgg 544
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gggtgttcctcttctcactaacccacccccacctccctgcccttgattcccctacactgg 744

                                                                       
Query: 545 ggcatctatagagccttcataagaccaagtttctctctttccattgatgaatggcaagac 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggcatctatagagccttcataagaccaagtttctctctttccattgatgaatggcaagac 804

                            
Query: 605 catcctctacttcatat 621
           |||||||||||||||||
Sbjct: 805 catcctctacttcatat 821


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no046_d06.g1 MSMg01no046_d06.g1 CHROMAT_FILE:
MSMg01no046_d06.g1 PHD_FILE: MSMg01no046_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:19 2005
         (531 letters)



>mm_chr1_19847509_19848439
          Length = 931

 Score =  994 bits (514), Expect = 0.0
 Identities = 526/530 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acccaaatcatttcattggaaatcaattagcattttcatttactttgttctgataaagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 acccaaatcatttcattggaaatcaattagcattttcatttactttgttctgataaagca 671

                                                                       
Query: 61  aaagcccacacattctctctaaaaggacatttccagacatgccatataaattattaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 aaagcccacacattctctctaaaaggacatttccagacatgccatataaattattaaaaa 611

                                                                       
Query: 121 gaaaaaagcattacagagtaattaggttaagtctatttcctcactcctccctccagctac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gaaaaaagcattacagagtaattaggttaagtctatttcctcactcctccctccagctac 551

                                                                       
Query: 181 ctcctttccaaatagattacttttcaaaaaaaaagtaacagttattcaaaacaaaatatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ctcctttccaaatagattacttttcaaaaaaaaagtaacagttattcaaaacaaaatatg 491

                                                                       
Query: 241 ttggtttgtcttacagccaaatgaaatggatctgcattgcacagtgatataagccaacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ttggtttgtcttacagccaaatgaaatggatctgcattgcacagtgatataagccaacct 431

                                                                       
Query: 301 caaattgatacatttatcaagtaaaggggaacaaaagcatagcttaagcagctctgttga 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 430 caaattgatacatttatcaagtaaaggggaaaaaaagcatagcttaagcagctctgttga 371

                                                                       
Query: 361 tcatttaaaaaatgttaatagtaaaatgctttaaaaaaacactatttagatacttatgac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tcatttaaaaaatgttaatagtaaaatgctttaaaaaaacactatttagatacttatgac 311

                                                                       
Query: 421 taatgtcgcaatgttagttaaattcaaaacattcattaatttcagctggctttcatcgtt 480
           ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 310 taatggcgcaatgttagttaaattcaaaacattcattaatttcagctggttttcatcgtt 251

                                                             
Query: 481 gtgaaaaataactcataagaaacttcaataattttcaaaagcaacataaa 530
           ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 250 gtgaaaaataactcaaaagaaacttcaataattttcaaaagcaacataaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)