CAXXXXXXXXXXXXXXXXXXXXXXXXCTATTCGAGAGATCCGCGGAATTC
TTTCATATTCGCCAAAAAAAAGCTCAATGTTGTCTGCTGTCCCTGCAGTC
ACTAAAGAAACACCCAGGGCTCACACATTTTCTGCTCTCTGCCCCTTTCA
ATCGGTTGGAGGACATTTTCCCTCTCTGTTAAGTTAGCTGCTCTGCTGAG
AGCACTTGCACTTTCTCAGAGGAAAAGCTTAGTGGTCCTCAGTTAACAGC
AGAACAAACGAGGGAACCAGGGAGACAGACAGCTGCTTCTAACATCTCCC
TGTCCTCATCAGTGATATGACCTTGATGTTGTTTTTGTTCTTCACGCAGT
TGCTTCCAATGGTTCGGTATCATGCCAGGACACTAATATTAACCTCATCC
AGTAACACTCTGACTGCACATGAACAGGGGTGTGTACACATTTAGCTCTG
CAATTTTGTCACATAGGTAGATTTTGGGGATCACTACACAGCCAGTATTC
ATAACAACTCTGTCATGTTATTCTTTTGCTGTTTTGATGCAGGTTCTCCT
GTAGTCCAGGCTAGCCCCAAACTCACTATGTAGCCAGGGATGACCTCTAA
CACCTGACCTTCATGCTCTCACCTTCCAAACACAGGATGGGCCACCCCAC
TCAGTCTTCCTTCCTGCCAGTCCTATAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXATTCTTTGCCATGGGAGCATTTGGAAATGCCTTTATGCTCTTCT
TTATTAATACAGTGTTACTGTTGTGTAATTAGACCATGGAGGGAGTGTGA
GGCAGGAGATGAGGAGATGCTTCTGGGACCTATGTGCATTAGTATTTGAA
AAGTGGAAAGCCTGTCTTTCTGTCCAACAACCAGGCCTTTCACTTCCTAA
CCCGTTTCCCACCAATAGTTTCTGCTGTTTTTCTCTTTGCCCTCATGCCA
TTTGTCCTGTGCTATTTGTCTGTCTGAAACATTGGTTGGTAAACTTTTAT
TTTTTGCCCGTGCATGTGGCATGTGTGCCTGCGTGTATGCGTGCTACCAA
GTGTATGAGTGAGCACATGTGTGGAGGCCACAAGTTGACGTTATATGTCT
TCCTTACTCTGTTTATCTGCTGAAGAGGGTTCTTTCACAGAACCAGGGCT
CGCAGATTCTGGCTCTAGCTCATCTAGTCTACTTAGTTTCCCAGTTTGCC
CTAGGCGACCATTTCTACCTTTTGAGCACCACGGCATATGCCGGCCATAT
GTCTGCCCAGCCTTTCACCTGCGGTCTCTATTCTCATCTTCACGTTTGTG
CCCTATAAGCTTT

Query= MSMg01no046_l01.b1 MSMg01no046_l01.b1 CHROMAT_FILE:
MSMg01no046_l01.b1 PHD_FILE: MSMg01no046_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:54 2005
         (552 letters)



>mm_chr1_158099542_158100495
          Length = 954

 Score = 1007 bits (521), Expect = 0.0
 Identities = 542/549 (98%), Gaps = 4/549 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctttcata-ttcgccaaaaaaaag-ctcaatgttgtctgctgtccctgcagtcac 64
           ||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 207 gaattctttcatagtt-gccaaaaaaaagtctcaatgttgtctgctgtccctgcagtcac 265

                                                                       
Query: 65  taaagaaacacccagggctcacacattttctgctctctgcccctttcaatcggttggagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 taaagaaacacccagggctcacacattttctgctctctgcccctttcaatcggttggagg 325

                                                                       
Query: 125 acattttccctctctgttaagttagctgctctgctgagagcacttgcactttctcagagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 acattttccctctctgttaagttagctgctctgctgagagcacttgcactttctcagagg 385

                                                                       
Query: 185 aaaagcttagtggtcctcagttaacagcagaacaaacgagggaaccaggg-agacagaca 243
           |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 386 aaaagcttagtggtcctcagttaacagcaggacaaacgagggaaccaggggagacagaca 445

                                                                       
Query: 244 gctgcttctaacatctccctgtcctcatcagtgatatgaccttgatgttgtttttgttct 303
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gctgcttctaacatctccgtgtcctcatcagtgatatgaccttgatgttgtttttgttct 505

                                                                       
Query: 304 tcacgcagttgcttccaatggttcggtatcatgccaggacactaatattaacctcatcca 363
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tcacgcagttgcttccagtggttcggtatcatgccaggacactaatattaacctcatcca 565

                                                                       
Query: 364 gtaacactctgactgcacatgaacaggggtgtgtacacatttagctctgcaattttgtca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gtaacactctgactgcacatgaacaggggtgtgtacacatttagctctgcaattttgtca 625

                                                                       
Query: 424 cataggtagattttggggatcactacacagccagtattcataacaactctgtcatgttat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cataggtagattttggggatcactacacagccagtattcataacaactctgtcatgttat 685

                                                                       
Query: 484 tcttttgctgttttgatgcaggttctcctgtagtccaggctagccccaaactcactatgt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tcttttgctgttttgatgcaggttctcctgtagtccaggctagccccaaactcactatgt 745

                    
Query: 544 agccaggga 552
           |||||||||
Sbjct: 746 agccaggga 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 954
Length adjustment: 10
Effective length of query: 542
Effective length of database: 944
Effective search space:   511648
Effective search space used:   511648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no046_l01.g1 MSMg01no046_l01.g1 CHROMAT_FILE:
MSMg01no046_l01.g1 PHD_FILE: MSMg01no046_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:54 2005
         (343 letters)



>mm_chr1_158280613_158281355
          Length = 743

 Score =  650 bits (336), Expect = 0.0
 Identities = 339/340 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctttgccatgggagcatttggaaatgcctttatgctcttctttattaatacagtgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 attctttgccatgggagcatttggaaatgcctttatgctcttctttattaatacagtgtt 481

                                                                       
Query: 61  actgttgtgtaattagaccatggagggagtgtgaggcaggagatgaggagatgcttctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 actgttgtgtaattagaccatggagggagtgtgaggcaggagatgaggagatgcttctgg 421

                                                                       
Query: 121 gacctatgtgcattagtatttgaaaagtggaaagcctgtctttctgtccaacaaccaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gacctatgtgcattagtatttgaaaagtggaaagcctgtctttctgtccaacaaccaggc 361

                                                                       
Query: 181 ctttcacttcctaacccgtttcccaccaatagtttctgctgtttttctctttgccctcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ctttcacttcctaacccgtttcccaccaatagtttctgctgtttttctctttgccctcat 301

                                                                       
Query: 241 gccatttgtcctgtgctatttgtctgtctgaaacattggttggtaaacttttattttttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gccatttgtcctgtgctatttgtctgtctgaaacattggttggtaaacttttattttttg 241

                                                   
Query: 301 cccgtgcatgtggcatgtgtgcctgcgtgtatgcgtgcta 340
           ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 240 cccgtgcatgtggcatgtgtgcctgtgtgtatgcgtgcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)