BAC Information

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BAC

Clone NameMSMg01-046M10
Chromosome1 (Build37)
Map Location 76,387,528 - 76,538,775
singlet/doubletdoublet
Overlap genenone
Upstream geneSpeg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
Downstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046M10.T7 (MSMg01no046_m10.b1)MSMg01-046M10.TJ (MSMg01no046_m10.g1)
ACCAG277071AG277072
length687694
length of high quality
(start - end)		441 (53 - 493)480 (73 - 552)
definitionCHROMAT_FILE: MSMg01no046_m10.b1 PHD_FILE: MSMg01no046_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:00 2005CHROMAT_FILE: MSMg01no046_m10.g1 PHD_FILE: MSMg01no046_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,538,335 - 76,538,775)(76,387,528 - 76,388,004)
sequence
GCGGCGCTAATACACTCCTATTCCGAGAGGACCGCGGAATCAGAATATCA
CATTGAAATATAGATTTCTAGTTCCTCCTAGAAGACAGTTCTGGATATGC
TGGCTGGACCTTGGGGATGTCTCTTCCTTTGGCCCAGTCCTATCCTGCCC
CTTTGCAAAGCATACAGGTCTCTTCTCCTACCCACATTGCTCTTGTGCCT
CGTTGAACATGAGCATGAACTTAGTTCTAGAAACAACTTTAGTAAGTAAA
GAAAAAGAAAGCTTAGAAAGTATGTGCTCTTCCTTGCTTCCATTATTGCT
TAAGCTCTGCCATACTTTCTCAAATCCCCATTTACCTAAGCCAAAGTTCC
AGTGAAATTTGTTTTCGCAGATTGCCCTGTTAATATTTAATGATGTTTCT
CTTTGAATTTTAAAGTAGTAATTAAATTGAACTGTTCAGAAAGACCATAT
TAATTCCAATTTTAAAAATATAGACGAGAGTACATCTTGCTCAAAACAGG
AGCATGGTAAAAAGCGAACATTAATTCTGTAGGGTGAGCCTGGATATCAT
CTATTAAATATTTATTTCAATAATTACAAAAATATTCAGACAAGATCTAC
CAGAGAAACCTAAAAATAAGTTCTAAAAAGAAAACTTCCTATTCTCTAAC
TTTCTTGGCACCCTTTGGCTACCACCCTCTCAACTTT

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAATTAAGGAGTTGTCAGTAGTTTTACA
GAGTGGATGCTGATTAAATTATCAATTCATAACTTCAAGTGTCCAATAGA
CGAAGAGATCATGGTATCCAGCTAACAGGGACACTGAAATAAAGATGGAT
CATTATTGATGGCAGGGAGAAAAACCAACAACAATAAATGTCTCTGAAGA
AATATAACTGGTTTGATGTTTTTCCCGAAGCCAGAGCAGTTTCTCAGTCT
GAGTATTTGCCTGGTGGGTATTAAGGGGGGATGCCATGTCTGGGTTGCTA
AGTTTTGAGGTACCTGAAGACATGTCTTCTGTCTAGAGGCCAATCAAACT
GGGGATACTCGATACAACCTTAAGCAGGTAAGTGCTTCCAAATGTGAGGA
GCACAAGGCATTCTGGGAAGTTATAACTGAAGGTCTAACTCAGGAAGAAA
GAACATTTGTGGTAGACAGTGTCCTAACTGTCTGTTATACAGCAATTGGG
AACACAAGGAACCATCATGAACTTTCATGCAAGTAGAATTCATTAAACAC
ACCAAAGGCAGAATTGAGCAGAGCGATTTGGAAAACAGACAAACAGAAAC
TGGACATACTCTTCCATCCCGTGAAACTTTTCCCACAGTGGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_m10.b1 MSMg01no046_m10.b1 CHROMAT_FILE:
MSMg01no046_m10.b1 PHD_FILE: MSMg01no046_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:00 2005
         (441 letters)



>mm_chr1_76538135_76538975
          Length = 841

 Score =  853 bits (441), Expect = 0.0
 Identities = 441/441 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgaaatatagatttctagttcctcctagaagacagttctggatatgctggctggacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ttgaaatatagatttctagttcctcctagaagacagttctggatatgctggctggacctt 582

                                                                       
Query: 61  ggggatgtctcttcctttggcccagtcctatcctgcccctttgcaaagcatacaggtctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ggggatgtctcttcctttggcccagtcctatcctgcccctttgcaaagcatacaggtctc 522

                                                                       
Query: 121 ttctcctacccacattgctcttgtgcctcgttgaacatgagcatgaacttagttctagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ttctcctacccacattgctcttgtgcctcgttgaacatgagcatgaacttagttctagaa 462

                                                                       
Query: 181 acaactttagtaagtaaagaaaaagaaagcttagaaagtatgtgctcttccttgcttcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 acaactttagtaagtaaagaaaaagaaagcttagaaagtatgtgctcttccttgcttcca 402

                                                                       
Query: 241 ttattgcttaagctctgccatactttctcaaatccccatttacctaagccaaagttccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ttattgcttaagctctgccatactttctcaaatccccatttacctaagccaaagttccag 342

                                                                       
Query: 301 tgaaatttgttttcgcagattgccctgttaatatttaatgatgtttctctttgaatttta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tgaaatttgttttcgcagattgccctgttaatatttaatgatgtttctctttgaatttta 282

                                                                       
Query: 361 aagtagtaattaaattgaactgttcagaaagaccatattaattccaattttaaaaatata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aagtagtaattaaattgaactgttcagaaagaccatattaattccaattttaaaaatata 222

                                
Query: 421 gacgagagtacatcttgctca 441
           |||||||||||||||||||||
Sbjct: 221 gacgagagtacatcttgctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no046_m10.g1 MSMg01no046_m10.g1 CHROMAT_FILE:
MSMg01no046_m10.g1 PHD_FILE: MSMg01no046_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:00 2005
         (480 letters)



>mm_chr1_76387328_76388207
          Length = 880

 Score =  915 bits (473), Expect = 0.0
 Identities = 476/477 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caattaaggagttgtcagtagttttacagagtggatgctgattaaattatcaattcataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caattaaggagttgtcagtagttttacagagtggatgctgattaaattatcaattcataa 260

                                                                       
Query: 61  cttcaagtgtccaatagacgaagagatcatggtatccagctaacagggacactgaaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcaagtgtccaatagacgaagagatcatggtatccagctaacagggacactgaaataa 320

                                                                       
Query: 121 agatggatcattattgatggcagggagaaaaaccaacaacaataaatgtctctgaagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatggatcattattgatggcagggagaaaaaccaacaacaataaatgtctctgaagaaa 380

                                                                       
Query: 181 tataactggtttgatgtttttcccgaagccagagcagtttctcagtctgagtatttgcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tataactggtttgatgtttttcccgaagccagagcagtttctcagtctgagtatttgcct 440

                                                                       
Query: 241 ggtgggtattaaggggggatgccatgtctgggttgctaagttttgaggtacctgaagaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtgggtattaaggggggatgccatgtctgggttgctaagttttgaggtacctgaagaca 500

                                                                       
Query: 301 tgtcttctgtctagaggccaatcaaactggggatactcgatacaaccttaagcaggtaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtcttctgtctagaggccaatcaaactggggatactcgatacaaccttaagcaggtaag 560

                                                                       
Query: 361 tgcttccaaatgtgaggagcacaaggcattctgggaagttataactgaaggtctaactca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcttccaaatgtgaggagcacaaggcattctgggaagttataactgaaggtctaactca 620

                                                                    
Query: 421 ggaagaaagaacatttgtggtagacagtgtcctaactgtctgttatacagcaattgg 477
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaagaaagaacatttgtggtagacagtgtcctaactgtctgttatacagcaattgg 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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