BAC Information

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BAC

Clone NameMSMg01-047F14
Chromosome1 (Build37)
Map Location 68,357,299 - 68,418,607
singlet/doubletdoublet
Overlap geneErbb4
Upstream geneKif22-ps
Downstream geneLOC667842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047F14.T7 (MSMg01no047_f14.b1)MSMg01-047F14.TJ (MSMg01no047_f14.g1)
ACCAG277458AG277459
length698698
length of high quality
(start - end)		518 (47 - 564)569 (76 - 644)
definitionCHROMAT_FILE: MSMg01no047_f14.b1 PHD_FILE: MSMg01no047_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:40 2005CHROMAT_FILE: MSMg01no047_f14.g1 PHD_FILE: MSMg01no047_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,357,299 - 68,357,812)(68,418,039 - 68,418,607)
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGGAGTTTTCGTGCTAGACCACAGTGTAGAATCTTTTGCTGTTG
TTTAGATTTTGTTTTCAAATGTACCCAAGACTTTGATGACCTTGTTTTAA
GTTTTCTACTTAAAGTTCACCATTTGTGTTCTCAATTGCAGTGAACACTC
ATTCAATATAGCATTAGTGCATAACGACTTTAATGACAGCATGCAATGCA
TTGAATAAAGACAAAAGTCTTCAAATCCTTTCCTGCATATCTGAAAGCTT
ATTCAAGACACCTGAATAACAACATTCTTTCCATGATAAGTTAAGAATTC
TCCAGATTGAACTGTGAAAACCTTCTCTATCTTCCTGTTAGTTACCAATC
TCACTAATACAAAGTTCAAATTTTTAGCCAAGACTATTTGAGAGTTGTGT
TGCTATAGAGGGAACACAAACAGCAAGCATGCTAGGCATCATGAACGTCA
GCTCATTCAGTGTGCCCTAGAGATCATGAAACTCAACTTACCCAGCATGC
CCTAGAGATCATGAAACTCAACTTACCCAGCATGCATTATAGATCGTGAA
ACTCATATTACCCAGCATGCACTATGGATCATAATGGTCAACTTAACCAG
TATGTACTTGAAAAGTTTAGCTACTTCCATTTTCCTTTATAACGACTT

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTAAAAGGCTTCATCTACTTTCTC
ATAAAAAAATTGTCCTCAAAAATTTTTCATTTCTTATTCTGACTCACAGT
CCTCTCTAATTTCTGATGGCCCAAATAAGATTTACTTAGGTTTATTAATT
TGCAACAAAGGAACTCCAGTAAATTTTTAATAATAATAATCATTATCACT
GATTAAAATTATATTGTTTGCTCCAGATGGAATTCTTTTCCTGGAAGCAA
GAATGAGTTTGCATTGTGAGAATGTAATGTGTTTAGACCCAAACAGGCAG
ATGGCAGAATGACAGACTACCACACACTCATGATGTCAGTAGCTGTATCT
CACCAACGCTTGCTTTAAATAAACTCTGTTGCCAAAAGAATCCCCATACT
TTTCAAAAGATAACTAGACTTGAGAGCCTAAACATTACGTGAGGTTGGAC
ATGGTTCTTTTTCATTTCCAAAAATAGACTCCCATGAAGTCTAAGTTTCA
GGCAAAGGAAGTATCAGTCAGGTGTAGTTTATCAGCGAGAGTTGCTGATC
TTTGTAGATTACCTGGTCACTCTCATTAGACAGGGAAAACTGGTAAGTAG
TAACAGTTCTCCGTTAAGGATCTTAGAAGTGTGATTCAAGGGAGGACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_f14.b1 MSMg01no047_f14.b1 CHROMAT_FILE:
MSMg01no047_f14.b1 PHD_FILE: MSMg01no047_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:40 2005
         (518 letters)



>mm_chr1_68357095_68358012
          Length = 918

 Score =  986 bits (510), Expect = 0.0
 Identities = 513/514 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctggagttttcgtgctagaccacagtgtagaatcttttgctgttgtttagatttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggagttttcgtgctagaccacagtgtagaatcttttgctgttgtttagatttt 264

                                                                       
Query: 65  gttttcaaatgtacccaagactttgatgaccttgttttaagttttctacttaaagttcac 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttttcaaatgtaccaaagactttgatgaccttgttttaagttttctacttaaagttcac 324

                                                                       
Query: 125 catttgtgttctcaattgcagtgaacactcattcaatatagcattagtgcataacgactt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catttgtgttctcaattgcagtgaacactcattcaatatagcattagtgcataacgactt 384

                                                                       
Query: 185 taatgacagcatgcaatgcattgaataaagacaaaagtcttcaaatcctttcctgcatat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taatgacagcatgcaatgcattgaataaagacaaaagtcttcaaatcctttcctgcatat 444

                                                                       
Query: 245 ctgaaagcttattcaagacacctgaataacaacattctttccatgataagttaagaattc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgaaagcttattcaagacacctgaataacaacattctttccatgataagttaagaattc 504

                                                                       
Query: 305 tccagattgaactgtgaaaaccttctctatcttcctgttagttaccaatctcactaatac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tccagattgaactgtgaaaaccttctctatcttcctgttagttaccaatctcactaatac 564

                                                                       
Query: 365 aaagttcaaatttttagccaagactatttgagagttgtgttgctatagagggaacacaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaagttcaaatttttagccaagactatttgagagttgtgttgctatagagggaacacaaa 624

                                                                       
Query: 425 cagcaagcatgctaggcatcatgaacgtcagctcattcagtgtgccctagagatcatgaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagcaagcatgctaggcatcatgaacgtcagctcattcagtgtgccctagagatcatgaa 684

                                             
Query: 485 actcaacttacccagcatgccctagagatcatga 518
           ||||||||||||||||||||||||||||||||||
Sbjct: 685 actcaacttacccagcatgccctagagatcatga 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no047_f14.g1 MSMg01no047_f14.g1 CHROMAT_FILE:
MSMg01no047_f14.g1 PHD_FILE: MSMg01no047_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:40 2005
         (569 letters)



>mm_chr1_68417674_68418642
          Length = 969

 Score = 1085 bits (561), Expect = 0.0
 Identities = 567/569 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaaaaggcttcatctactttctcataaaaaaattgtcctcaaaaatttttcatttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 attaaaaggcttcatctactttctcataaaaaaattgtcctcaaaaatttttcatttctt 875

                                                                       
Query: 61  attctgactcacagtcctctctaatttctgatggcccaaataagatttacttaggtttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 attctgactcacagtcctctctaatttctgatggcccaaataagatttacttaggtttat 815

                                                                       
Query: 121 taatttgcaacaaaggaactccagtaaatttttaataataataatcattatcactgatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 taatttgcaacaaaggaactccagtaaatttttaataataataatcattatcactgatta 755

                                                                       
Query: 181 aaattatattgtttgctccagatggaattcttttcctggaagcaagaatgagtttgcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 aaattatattgtttgctccagatggaattcttttcctggaagcaagaatgagtttgcatt 695

                                                                       
Query: 241 gtgagaatgtaatgtgtttagacccaaacaggcagatggcagaatgacagactaccacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 gtgagaatgtaatgtgtttagacccaaacaggcagatggcagaatgacagactaccacac 635

                                                                       
Query: 301 actcatgatgtcagtagctgtatctcaccaacgcttgctttaaataaactctgttgccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 actcatgatgtcagtagctgtatctcaccaacgcttgctttaaataaactctgttgccaa 575

                                                                       
Query: 361 aagaatccccatacttttcaaaagataactagacttgagagcctaaacattacgtgaggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 aagaatccccatacttttcaaaagataactagacttgagagcctaaacattacgtgaggt 515

                                                                       
Query: 421 tggacatggttctttttcatttccaaaaatagactcccatgaagtctaagtttcaggcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tggacatggttctttttcatttccaaaaatagactcccatgaagtctaagtttcaggcaa 455

                                                                       
Query: 481 aggaagtatcagtcaggtgtagtttatcagcgagagttgctgatctttgtagattacctg 540
           |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 454 aggaagtatcagtcaggtgtagtttatcagtgagagttgttgatctttgtagattacctg 395

                                        
Query: 541 gtcactctcattagacagggaaaactggt 569
           |||||||||||||||||||||||||||||
Sbjct: 394 gtcactctcattagacagggaaaactggt 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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