BAC Information

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BAC

Clone NameMSMg01-047J02
Chromosome1 (Build37)
Map Location 165,091,968 - 165,092,141
singlet/doubletsinglet
Overlap genenone
Upstream geneDnm3, Dnm3os, 5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik
Downstream genePrrx1, LOC100039597, Scyl1bp1, LOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047J02.T7 (MSMg01no047_j02.b1)MSMg01-047J02.TJ (MSMg01no047_j02.g1)
ACCAG277589AG277590
length858701
length of high quality
(start - end)
171 (188 - 358)300 (71 - 370)
definitionCHROMAT_FILE: MSMg01no047_j02.b1 PHD_FILE: MSMg01no047_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:56 2005CHROMAT_FILE: MSMg01no047_j02.g1 PHD_FILE: MSMg01no047_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCCCCCCTTTTTTCTTTCTCCTCTCTTCTCTTTTCCCTTTTTCCCCCC
ATATNNCCCTATCAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTTCCAAATTCCCCCTGTTGGTTATATAATTCGA
ACAGCCTAGTTGCATTGGCTATGATATGGTTTTATCACTGTTTCATGAGG
TAGTTACAGGACAATGCAAACACATACATAAGTTACATATTTCAGAGCCT
GGCTCATGTGAGTAATGGTTTAATTGTGATTTAAAATAAGTTAAATCATA
TTTTATTTGTCTTCTTCCTTCACTGCGTGTGTGTGTGGGGGGGGGGTGCC
CATTAGCCTGCCACTGCACAGGTATGAACGGCACATGATTGTTATTCCTC
CAGTTAAGGCTAGAACGAGAGAATATGTGTTTGTGCCCACCACCTTACAT
AGACTCTTTCCCAGTATACCATTGCTCTGGATGCATACTCAAAAGAATAC
TGTTTCCTCCTCTCAGTGTTTCCCATTCACTTCAAGTTTTTTCTTACCCC
ATGCCTTCGTTTTCTTGACATCTTTGCTAAACCTAATAATCATTGTTTAC
ACTTCTTTATTTTGTTCCCCCCTTATTTTCCTCCCATCCCTTTTCCCCAA
ACCCAAGTATTGGAATTCCTATTATCTGCCCGCTTCTTGTTTGTTTTTAA
CACGACTCCTGTCCCTTATTTATTCCGCCCCTCTCTTCTCATACTTTGCC
CTTCTTTCACTTTCCCTCCCCGCCTACCTTTATTTTTGTCTGCACCCTCC
TCCCAAAAATAGAATTTTCATAAAACTCCCATTTTAGACGGATTATCTCT
CACCCACN
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTATGCGTCTTGACCCTTCGTTGACGAAGGG
CTTCTCCACCTGGATTTCCTCTGCATTTCCTACTTTAAGGAGCGGGTGGG
TGTAGGCTTGTTTGCCATGATCCTATGCGGCGGAGCATTGCTTTTGCTCT
GGATGGTCTGTAAACTTAAAGCCCAAACAAAAAGGGACAAGATGGTGATA
GCCCAAGCACTTGCAGCATTAGAACACGGTGCCTCCCCTGATATATGGTT
ATCTATACTTAAGCAATAGGTCGCTGGCCACTCAGCTCTTGCACCCCACG
AAGCTAGTCTCATTGCACAGGATAGAGTGAGTGTGCTTCAGCAGCCTGAG
AGAGTTGCATGGCTAAGCACTGCAGCATAAAGGCTCTGAGGCATAAAATG
AGCCTATTCTAGGGAGACATGTCATCTCGCACGAAGTTTGAGTGTCCAAG
TGTCCTTCCCCCAGGAATAATGACTCGTGAGTGGATCTAGACTCCTCCGG
TTGCCGAGCCTGGCACAAGGCTCGCGCAATGCCCCTATTTTTGCACACTG
GTGATCTGACCTCTATCCCCTTTCTCAGTTATGGTTGGTCCGTTGCCTTC
TCCCTTTATTCACTATGTCTTACATGTTGACGCAGCCTTCTCCCGCCACC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_j02.b1 MSMg01no047_j02.b1 CHROMAT_FILE:
MSMg01no047_j02.b1 PHD_FILE: MSMg01no047_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:56 2005
         (171 letters)



>mm_chr1_165091768_165092341
          Length = 574

 Score =  306 bits (158), Expect = 6e-88
 Identities = 169/174 (97%), Gaps = 3/174 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtttcatgaggtagttacaggacaatgcaaacacatacataagttacatatttcagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ctgtttcatgaggtagttacaggacaatgcaaacacatacataagttacatatttcagag 315

                                                                       
Query: 61  cctggctcatgtgagtaatggtttaattgtgatttaaaataagttaaatcatattttatt 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cctggcacatgtgagtaatggtttaattgtgatttaaaataagttaaatcatattttatt 255

                                                                 
Query: 121 tgtcttcttccttcactgcgtgtgtgtgtg---gggggggggtgcccattagcc 171
           |||||||||||||||||| |||||||||||   |||||||||||||||||||||
Sbjct: 254 tgtcttcttccttcactgtgtgtgtgtgtgtgtgggggggggtgcccattagcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 574
Length adjustment: 8
Effective length of query: 163
Effective length of database: 566
Effective search space:    92258
Effective search space used:    92258
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)