Query= MSMg01no047_j13.b1 MSMg01no047_j13.b1 CHROMAT_FILE:
MSMg01no047_j13.b1 PHD_FILE: MSMg01no047_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:57 2005
(465 letters)
>mm_chr1_83053895_83054762
Length = 868
Score = 797 bits (412), Expect = 0.0
Identities = 446/464 (96%), Gaps = 12/464 (2%)
Strand = Plus / Plus
Query: 5 gaattcaaagcaatccaggtcactcttttttttttttttccttttcttttctgacactct 64
|||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 214 gaattcaaagcaatccaggtcactcttttttt---------ttttcttttttgacactct 264
Query: 65 acagtgttcccttgtatggataaatcgtgtgatctgacttcattagcggaagactgacca 124
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 265 acagtgttcccttgtatggataaatcgtgtgatctgacttcattaacggaagactgacca 324
Query: 125 gtggctcagttttcctggccttttcacgccatgtactgcaataaatactagatgaggaga 184
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 325 gtggttcagttttcctggccttttcacgccatgtactgcaataaatactaaatgaggaga 384
Query: 185 acttttttttagatgtgaaaatttgaaactataaagcatttttgtt---tttttttaaat 241
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 385 acttttttttagatgtgaaaatttgaaactataaagcatttttgttttgtttttttaaat 444
Query: 242 attcaaattggtagattgctgtcctaggagataacgtcatttcacattcctgcttctata 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attcaaattggtagattgctgtcctaggagataacgtcatttcacattcctgcttctata 504
Query: 302 gtaaaagaatgacgttccacatctatgcctgtagtttgctacccatttctaaaaatgact 361
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 505 gtagaagaatgacgttccacatctatgcctgtagtttgccacccatttctaaaaatgact 564
Query: 362 agcggggactgaaagaaaaatgctgaagaagtgaaggatgaattccctagttatttgcat 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agcggggactgaaagaaaaatgctgaagaagtgaaggatgaattccctagttatttgcat 624
Query: 422 ttaatgcaaactgataccagtgatggtattgtaaatgtgtgtgt 465
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttaatgcaaactgataccagtgatggtattgtaaatgtgtgtgt 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 868
Length adjustment: 10
Effective length of query: 455
Effective length of database: 858
Effective search space: 390390
Effective search space used: 390390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_j13.g1 MSMg01no047_j13.g1 CHROMAT_FILE:
MSMg01no047_j13.g1 PHD_FILE: MSMg01no047_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:58 2005
(526 letters)
>mm_chr1_83076298_83077222
Length = 925
Score = 986 bits (510), Expect = 0.0
Identities = 522/528 (98%), Gaps = 5/528 (0%)
Strand = Plus / Minus
Query: 1 accttctccaaaggcattcatctgggcaaaacaactgaaggacaacacactgatgggtag 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 725 accttctccaaaggcattcatctgggcaaaacaactgaaggacaacacac---tgggtag 669
Query: 61 atctaggagcagttaaaagaaaatcctagaaatgaagacactctgaggaaaatacccata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 atctaggagcagttaaaagaaaatcctagaaatgaagacactctgaggaaaatacccata 609
Query: 121 gccacccataacataatgctgggtggaattatgggatagcatcacagctgtgtttaccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gccacccataacataatgctgggtggaattatgggatagcatcacagctgtgtttaccat 549
Query: 181 aaggacaagtgaacagaatcatataatacggtgagataaatgag--aataaaatcattat 238
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 548 aaggacaagtgaacagaatcatataatacggtgagataaatgagacaataaaatcattat 489
Query: 239 gtgaaattgagctttgcttagtaaacaaatacttcatttgctaacaggttgaccacctca 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gtgaaattgagctttgcttagtaaacaaatacttcatttgctaacaggttgaccacctca 429
Query: 299 agaatcttcaatgggacctttgccttgagaagataacagttcccagcacttaatcttggc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 agaatcttcaatgggacctttgccttgagaagataacagttcccagcacttaatcttggc 369
Query: 359 tcttagggtggttatgtcagccacacagtttgcaaataggttctgatcttgtaagatttt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tcttagggtggttatgtcagccacacagtttgcaaataggttctgatcttgtaagatttt 309
Query: 419 ccccgattaaacacaaacctctgagtcagcagtaagacctatgctaaagggaaaggtgct 478
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 308 ccccgattaaacacaaacctctgagtcagcagtaagacctatgttaaagggaaaggtgct 249
Query: 479 gtgggctgacatttaattacaatttaattacaattccaatctttctaa 526
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gtgggctgacatttaattacaatttaattacaattccaatctttctaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 925
Length adjustment: 10
Effective length of query: 516
Effective length of database: 915
Effective search space: 472140
Effective search space used: 472140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
