Query= MSMg01no047_k15.b1 MSMg01no047_k15.b1 CHROMAT_FILE:
MSMg01no047_k15.b1 PHD_FILE: MSMg01no047_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:02 2005
(633 letters)
>mm_chr1_127773328_127774361
Length = 1034
Score = 1143 bits (591), Expect = 0.0
Identities = 621/631 (98%), Gaps = 2/631 (0%)
Strand = Plus / Plus
Query: 4 ggaattctctcaagtttccatccattctacctgttagaatactaacttttatacactata 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctcaagtttccatccattctacctgttagaatactaacttttatacactata 263
Query: 64 ttccagaacttgaattttaaaaacattgtcatttagcagtccagctgcttaaagga-taa 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 264 ttccagaacttgaattttaaaaacattgtcatttagcagtccagctgcttaaaggaataa 323
Query: 123 agctcactggaattgaactggcaaatgatctttgtgtgtttcacatgtacagtgcacaaa 182
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agctcactggaattgaacgggcaaatgatctttgtgtgtttcacatgtacagtgcacaaa 383
Query: 183 tgcactcacacatgcacacacacacaccctgtaaatgaagttatgtcacttgggctgact 242
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgcactcacacacgcacacacacacaccctgtaaatgaagttatgtcacttgggctgact 443
Query: 243 ctccttccggcaagagccatagagcatctaacaaaaagcaccagggattaggaacctcct 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctccttccggcaagagccatagagcatctaacaaaaagcaccagggattaggaacctcct 503
Query: 303 tttgaattgttgctcaagggaatctaagaggcttctgaaacagtctaggctattactctt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 504 tttgaattgttgctcaagggaatctaagaggcttctgaaacagtctaggctattactgtt 563
Query: 363 gcccttggttgccgctgagaggttgaaggtgagcccttgtaactgaagacaccacatacc 422
||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 564 gcc-ttggttgccgctgagaggttgaaggtgagtccttgtaactgaagacatcacatacc 622
Query: 423 tcagactcgggactcagaagattatagcagaagttaacctgaaagtctcttctctaagga 482
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 623 tcagactcgggactcagaagattatagcaggagttaacctgaaagtctcttctctaagga 682
Query: 483 ctagcttgcggtagaacagtggatctcggccttcctaatgaacatacttcctcatgttgt 542
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 683 ctagcttgcggtagaacagtggatctcggccttcctaatgaacacacttcctcatgttgt 742
Query: 543 agtgaccctaaccatgaaatgatttttggtgctactctgtaactgtaattttgctactgt 602
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 743 agtgaccctaaccatgaaatgatttttggtgctactccgtaactgtaattttgctactgt 802
Query: 603 tataaatcataaggtaaatatctgatatgca 633
|||||||||||||||||||||||||||||||
Sbjct: 803 tataaatcataaggtaaatatctgatatgca 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1034
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1024
Effective search space: 637952
Effective search space used: 637952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_k15.g1 MSMg01no047_k15.g1 CHROMAT_FILE:
MSMg01no047_k15.g1 PHD_FILE: MSMg01no047_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:02 2005
(544 letters)
>mm_chr1_127880363_127881306
Length = 944
Score = 872 bits (451), Expect = 0.0
Identities = 460/463 (99%)
Strand = Plus / Minus
Query: 1 aaagagcccggtttacagcttgtggtctggcaatactttgtgctaatggggaagaaaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aaagagcccggtttacagcttgtggtctggcaatactttgtgctaatggggaagaaaagg 404
Query: 61 agaggatagaggccagaaaattccagtccagtggcaccagacaaagagttcttcactctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 agaggatagaggccagaaaattccagtccagtggcaccagacaaagagttcttcactctt 344
Query: 121 tcattttgaaccccaaatttgtcctcagtcctattgtctgcaactagacctagcagaagc 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tcattttggaccccaaatttgtcctcagtcctattgtctgcaactagacctagcagaagc 284
Query: 181 atccaaacttagggggtggaggtctctgaaagaaaagctgatcgtctgtctccctttgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 atccaaacttagggggtggaggtctctgaaagaaaagctgatcgtctgtctccctttgct 224
Query: 241 gtgtctgtatgtgtgagtgcacatatgtgtataaacatgtggaggcccaaagtttgattt 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 223 gtgtctgtatgtgtgagtgcacatatgtgtataaacatgtagaggcccaaagtttgattt 164
Query: 301 cagatatattcctcagtggctctcccctttatcattcatatgaagctgggaactgagctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 cagatatattcctcagtggctctcccctttatcattcatatgaagctgggaactgagctg 104
Query: 361 cactccattcagtatatcctataaagaccgaagccacttttatacagggacactgcttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 cactccattcagtatatcctataaagaccgaagccacttttatacagggacactgcttct 44
Query: 421 ctactacatacttctttgttgctttgataaactgctatgacca 463
||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 43 ctactacatacttttttgttgctttgataaactgctatgacca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
