TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAATCTTAATGACCAATTTACAATTAACAAGATAGAAGTGAAACAA
ATTAAACCAACCATTATATATAACGAGACCCCATGGACTCCCATTGTTCC
TCTTAATTACAAAACGCAAATCACGAATACACAATGGGCAGTGCTAGACA
TCAATCCACAGGCCTAGCAACTCAGCAAGTCACAATGACAGGAAAACGAA
GAGAAGCAAAATCACACAGAGCCAGGTCTCTGCTCCTTCCTGTCCTTCTA
GCAGGCAAGGAGAGGGAGAGGGGGGCTGAGACCCAGCCGAAGTATGCTTG
ATCTCCAACATGCACTGACTCTGTCGGCGTGGGCTCCGGCTCATCTCTAG
CCAGCACCCAAAATTCCCTAGGTTGTCCCAGAACAGGTTTTAGATCACAG
TGCAAACGTGCCTGTAACATTTTAATGTGGATTTTCCAAATGTCTAGGGA
GAATACTTACTTCTTTCACTTTGACAAAGAAAAATAAATTGTATCAAAGA
TATTTAAGTATATTCATTTATCTCCCCCAGTAACCTTGTAAGAATATAAT
CTCTCATTGTACTCCAGAATGTGGAGGCAGATGATAGCTAACGCTTATGT
TCCCTCACCACCTTTCTCAATGTTTGCCTTGCCCCCCTTCCCCCTCTTTT
GT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAACCCGGGAAATTGGATCTT
AGCAATTTTTCATGTCACAACATTGGTATTCTGCTTACTCAACAAGCAGC
CCAGCCTAGTGGACATCTGAGGCTTATTAAGGGAGGGGTGGAGCTTGCCC
AGGATCCAGACCAGTAGCCAAGATTTTGTTCAATTAGAGTGTCAGCTCCT
AAAAGATACAACTGGAGGGCTTGAGGGGTCCCATAAAAATACCCACTGAA
ATAAAAAGCAGAAATAAACAGTAGACTTCATAACTAGCTGAGAGAATTTG
ACTGGGGGTGGGGGAGATGAAACTGACCCCACAGAAGGATTAAAAGGAAG
TGTGTCCACCTGTCCTAGCCCCCCATAGTAGACAGTTCGTCCAGGCCTTC
GATCCCCCACCCCTGCCTGTTATCGAGTGAGACCAAGGTTTCTCTTCTAA
TATTTCTAAGCCCTTCTTATATACCTCCCCATTGCTAATGCCGCCCTTGA
TGAGTTGTATTTCTTTCGACCCCTGTTCGCCTTGTCCCCGCTTCCTTTTC
CTCTTTTTCTTTACGTTCTTTCCCCTTCTCCTCGCATTTCCCTCTCTTGT
GATTTCTCGCTAACTCCCCATACATTTTTTTTTTAACTATTTTCATCTGC
CCCTATGACTCTACTTTTTTTTTTTCGTTCCGC

Query= MSMg01no047_m09.b1 MSMg01no047_m09.b1 CHROMAT_FILE:
MSMg01no047_m09.b1 PHD_FILE: MSMg01no047_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:10 2005
         (498 letters)



>mm_chr1_178881653_178882550
          Length = 898

 Score =  932 bits (482), Expect = 0.0
 Identities = 491/494 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaatcttaatgaccaatttacaattaacaagatagaagtgaaacaaattaaacc 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gaattcaaatcttaatgatcaatttacaattaacaagatagaagtgaaacaaattaaacc 639

                                                                       
Query: 65  aaccattatatataacgagaccccatggactcccattgttcctcttaattacaaaacgca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 aaccattatatataacgagaccccatggactcccattgttcctcttaattacaaaacgca 579

                                                                       
Query: 125 aatcacgaatacacaatgggcagtgctagacatcaatccacaggcctagcaactcagcaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 aatcacgaatacacaatgggcagtgctagacatcaatccacaggcctagcaactcagcaa 519

                                                                       
Query: 185 gtcacaatgacaggaaaacgaagagaagcaaaatcacacagagccaggtctctgctcctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gtcacaatgacaggaaaacgaagagaagcaaaatcacacagagccaggtctctgctcctt 459

                                                                       
Query: 245 cctgtccttctagcaggcaaggagagggagaggggggctgagacccagccgaagtatgct 304
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 458 cctgtccttctagcaggcaaggagagggagaggggggctgagacctagccgaagtatgct 399

                                                                       
Query: 305 tgatctccaacatgcactgactctgtcggcgtgggctccggctcatctctagccagcacc 364
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 398 tgatctccaacatgcactgactctgtcggcatgggctccggctcatctctagccagcacc 339

                                                                       
Query: 365 caaaattccctaggttgtcccagaacaggttttagatcacagtgcaaacgtgcctgtaac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 caaaattccctaggttgtcccagaacaggttttagatcacagtgcaaacgtgcctgtaac 279

                                                                       
Query: 425 attttaatgtggattttccaaatgtctagggagaatacttacttctttcactttgacaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 attttaatgtggattttccaaatgtctagggagaatacttacttctttcactttgacaaa 219

                         
Query: 485 gaaaaataaattgt 498
           ||||||||||||||
Sbjct: 218 gaaaaataaattgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no047_m09.g1 MSMg01no047_m09.g1 CHROMAT_FILE:
MSMg01no047_m09.g1 PHD_FILE: MSMg01no047_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:10 2005
         (296 letters)



>mm_chr1_178782898_178783593
          Length = 696

 Score =  555 bits (287), Expect = e-162
 Identities = 293/295 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaacccgggaaattggatcttagcaatttttcatgtcacaacattggtattctgctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaacccgggaaattggatcttagcaatttttcatgtcacaacattggtattctgctta 260

                                                                       
Query: 61  ctcaacaagcagcccagcctagtggacatctgaggcttattaagggaggggtggagcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcaacaagcagcccagcctagtggacatctgaggcttattaagggaggggtggagcttg 320

                                                                       
Query: 121 cccaggatccagaccagtagccaagattttgttcaattagagtgtcagctcctaaaagat 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccaggattcagaccagtagccaagattttgttcaattagagtgtcagctcctaaaagat 380

                                                                       
Query: 181 acaactggagggcttgaggggtcccataaaaatacccactgaaataaaaagcagaaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaactggagggcttgaggggtcccataaaaatacccactgaaataaaaagcagaaataa 440

                                                                  
Query: 241 acagtagacttcataactagctgagagaatttgactgggggtgggggagatgaaa 295
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagcagacttcataactagctgagagaatttgactgggggtgggggagatgaaa 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)