BAC Information

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BAC

Clone NameMSMg01-047M24
Chromosome1 (Build37)
Map Location 160,920,760 - 160,921,281
singlet/doubletsinglet
Overlap genenone
Upstream gene6430517E21Rik, Astn1, Pappa2
Downstream gene4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484, Tnr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047M24.T7 (MSMg01no047_m24.b1)MSMg01-047M24.TJ (MSMg01no047_m24.g1)
ACCAG277749AG277750
length7301,611
length of high quality
(start - end)
528 (46 - 573)---
definitionCHROMAT_FILE: MSMg01no047_m24.b1 PHD_FILE: MSMg01no047_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:13 2005CHROMAT_FILE: MSMg01no047_m24.g1 PHD_FILE: MSMg01no047_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATGGCAAATCCAACACTTCTCCAGAACCTGATGCCTGCTTGCCT
TCCTCGCTTCCTCTCTCCCCATTATTTCTCCCACCTTCTTTCCTTCTCCC
TGAAGCTTTGACAGTACCTTGCCTCAGTTCTTCATACTCTCCATCTCAAC
TTAGTGACTCAAAGTGTCACAGACCTCGATTGGGTCTCAATGCTTCCCAC
CTTCCCCTCCTTCCACTCATGCGGGCCAGATCAGCAGGAGTGATGTTCCT
CCCACCCCGTGTGATCTCTCCCACCTACTATTTAGAGTCAGAAGAAGCTT
AGAGCCTGTTATGCACATGTTATTGGCCTGTGAATAAGTGTCCGCAAGTG
TGAGCAGGACTTTTCATTCACCATCTTACTCAATCCTCTCCATAGCCTGT
GAAGCCAAGTAAGTCATACCTTAGGCAGTGAAGACATTTGTCCAAGGTCA
GGTCACATGACAGTAAATGACTAGGCCAGGCTTTCGTTGCCTCTCCCACA
TCGAGGCCTTGTGTCCTAACACACATTTCTTTCTGAAGCCAAAGCCATGC
GCATTTCCTTCTGAACAAATCCCAGTGAGGTCTCTCATAGATGAGACCCC
AGAGGAAGCTTACAGTCCTCTCCTGAATCCTTCTCGNGGATCTCCTCGCC
CCTGCTCACTATTACCCCTTGCGCCTTTGC
TCCCCCCTTTTTTCTTTCTCTCTCTCCCCTCTTCTCTCCCTTTCCTTCTT
CTTNTACACCCCCACTATATGTTTCTCTCACTATCCGCCCCCCGCCCTTC
TATTTATCCGCCTCTATTCTCGGTTACATAGGGCGGGTGGATTCCGCCTC
CGCCATGATGATTTTTAAGCGCGTTCACGAAAATAAAAATAACCGCGCCG
ATAATCAGCACCCTCGCTTCTATCATCTAGCCTATACATTAGGGCCCGGG
AGAAAAATTTAACGACCCCTAAGTGAAGCTAGATCTAATACCGTTACTAC
TATTTGTTTGTTGATTGCCCCATGTGTTACACCGCCCGCGTTAACTGCGG
CCGGTTTTTAGACCCGCAGACATTTACCCTCGCCAGCCCATTATTTTACC
ATATACGCGGCTATTTCTATAGAACTCTTTTGCGATTGTAGCGCCACACT
TATTAATGCCGGCGTTACCCGACCTCACTCATCTCATCCTCCACGCACCG
TATTTATCGGCTAGAGACAACATGCCGCGATTGTCGCGCGCCAGGTGCAT
AATAGAGTCACGCCCTAATATAATTATTTCAACGCCGACCGGAACTCACT
CATCTCCTCATGTATAGATCATCTCTCTTGATATACACCACGACTGTCCA
TATCTCACATACGCAGAACACGCCAGCTGTAAGCAACAAGACGTGTTGTG
TTTTGAGATGAGTCACGCGCATTAGAGACAGCACCGTTCTGCGGCTCGAT
GTCCTCGATCGACCCAGTGTGAGTAGAAGTCGCTTGTTATATAGTTACTA
GAACGAGCGTGAACGCGGCTCCTATTATGTGTTTACGACCCCCGCGCGCA
TATGTATCATGACACGAAGTACACACACTCTCGGGTGTGACTGTGCCGTA
TTAGGCTGTGTACATGCGTAACAAGTTTTGTATCACCTCTACCGTTGTGT
ATATTGCCACGTCTAGATAGTACATCGCACGAGCCTACCGCCACGTAAGT
CTATCTCGTTTATTTTACCTGCTGCGCGATTAAATATACCTGCGCTTGCA
GTATGTGAGCGCGACACAGACTTATTTGTTTCTCGCATCGTGCTATAGTG
TGAGGACAATCGACGTCTATCACTTATACACAGCCACGCGATCTATTAAC
ATATACGAGCGATTTCTCGCCTATCTCGTGATAGCTCAGGTCTCGACGCG
CTCTCCAGATCCTGTAAGAACACGCGAAACACAACGCCGCGCCTATTTGT
ACACGCACGTCGCGAAACGTATTTCAAGAGCGCCGACATGAATATACCTT
ATTGTATCGTGTCGCAGCGCGGCGTTATCTATTATGTTGTCCCTATCGTA
CTACTATCGTGTATTGACCACCCGCCACACGTTAGTATACACCTTACCGC
GAGACAAGTAACGTATTCTCCAGTACTGCCTCGCCAGTATATTCTCTNCG
AGCGTGGACGCTATTGAATAACAAATACACCAACATATGAATCGAGGATG
GATGAGCTAGATTATCGTCTCACATAGCGTATATATACTGAAGGGACTAT
AGTACACTCCCGCAATAACTATGACCATCATATGACATCCTGTAAAGTCA
AAAGCGAGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_m24.b1 MSMg01no047_m24.b1 CHROMAT_FILE:
MSMg01no047_m24.b1 PHD_FILE: MSMg01no047_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:13 2005
         (528 letters)



>mm_chr1_160920556_160921481
          Length = 926

 Score =  920 bits (476), Expect = 0.0
 Identities = 512/524 (97%), Gaps = 2/524 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatggcaaatccaacacttctccagaacctgatgcctgcttgccttcctcgctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gaattccatggcaaatccaacacttctccagaacctgatgcctgcttgccttcctcgctt 667

                                                                       
Query: 65  cctctctccccattatttctcccaccttctttccttctccctgaagctttgacagtacct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 666 cctctctccccattatttctcccaccttctttccttctccctgaagctttgacagtaact 607

                                                                       
Query: 125 tgcctcagttcttcatactctccatctcaacttagtgactcaaagtgtcacagacctcga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 606 tgcctcagttcttcatactctccatctcaacttagtgactcaaagtgtcccagacctcga 547

                                                                       
Query: 185 ttgggtctcaatgcttcccaccttcccctccttccactcatgcgggccagatcagcagga 244
           ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttgagtctcaatgcttctcaccttcccctccttccactcatgcgggccagatcagcagga 487

                                                                       
Query: 245 gtgatgttcctcccaccccgtgtgatctctcccacctactatttagagtcagaagaagct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gtgatgttcctcccaccccgtgtgatctctcccacctactatttagagtcagaagaagct 427

                                                                       
Query: 305 tagagcctgttatgcacatgttattggcctgtgaataagtgtccgcaagtgtgagcagga 364
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tagagcctgttatgcacatggcattggcctgtgaataagtgtccgcaagtgtgagcagga 367

                                                                       
Query: 365 cttttcattcaccatcttactcaatcctctccatagcctgtgaagccaagtaagtcatac 424
           ||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||| |||
Sbjct: 366 cttttcattcaccatcttattcagtcctctccacagcctgtgaagccaagtaagtcttac 307

                                                                       
Query: 425 cttaggcagtgaagacatttgtccaaggtcaggtcacatgacagtaaatgactaggccag 484
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 306 cttaggcagtgaagacatttgtccaaggtcaggtcacatgacagtaaatgacta-gccag 248

                                                       
Query: 485 gctttcgttgcctctcccacatcgaggccttgtgtcctaacaca 528
           ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 247 gctttcgttgcctctcccacatcgaggcc-tgtgtcctaacaca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 926
Length adjustment: 10
Effective length of query: 518
Effective length of database: 916
Effective search space:   474488
Effective search space used:   474488
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)