Query= MSMg01no048_d10.b1 MSMg01no048_d10.b1 CHROMAT_FILE:
MSMg01no048_d10.b1 PHD_FILE: MSMg01no048_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:54 2005
(551 letters)
>mm_chr1_177723822_177724779
Length = 958
Score = 830 bits (429), Expect = 0.0
Identities = 473/491 (96%), Gaps = 9/491 (1%)
Strand = Plus / Minus
Query: 1 tgtgttgcatatgtggagctcagaagacaca-tttgtggagctac------ccctc-tcc 52
||||||||||||| ||||||||||||||| | ||||||||||||| || || |||
Sbjct: 490 tgtgttgcatatgcggagctcagaagaca-attttgtggagctacttctctccttcttcc 432
Query: 53 agggtttgagctcaggttttcacacttgtgtggcaactaaatttgacacattgagctatc 112
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 431 agggtttgagctcaggttttcacacttgtgtggcaactaaatttgacacactgagctatc 372
Query: 113 tttctggtccctaatttgtacttttaaattgggatgcacaccctccatcccaaatcactt 172
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 371 tttctggtccctaatttgtacttttaaattgggatgtgcaccctccatcccaaatcactt 312
Query: 173 gaactcttttgttaaattaaagctactgtttcacagtaaaaaactttaaggacattcaaa 232
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gaactcttttgttaatttaaagctactgtttcacagtaaaaaactttaaggacattcaaa 252
Query: 233 gtgatgccatagcatctttcagtaatttatatcattaaagtttgatattaaggttcagcc 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gtgatgccatagcatctttcagtaatttatatcattaaagtttgatattaaggttcagcc 192
Query: 293 agtaaaggggcttgctgccaagcctggcaacctacatttgatccctgagacctgcatggt 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 agtaaaggggcttgctgccaagcctggcaacctacatttgatccctgagacctgcatggt 132
Query: 353 ggaagaggtgactctcacaggtttccttctgactttctcatcactgccacggcatgcatg 412
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 131 ggaagaggtgactctcacaggtttccttctgactttctcattactgccacggcatgcatg 72
Query: 413 tacatgtatgcatgtacaattatacatatacgcagataaataaagataataaaaatattt 472
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 71 tacatgtatgtatgtacaattatacatatacacagataaataaagataataaaaatattt 12
Query: 473 tatatgctcta 483
|||||||||||
Sbjct: 11 tatatgctcta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 958
Length adjustment: 10
Effective length of query: 541
Effective length of database: 948
Effective search space: 512868
Effective search space used: 512868
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no048_d10.g1 MSMg01no048_d10.g1 CHROMAT_FILE:
MSMg01no048_d10.g1 PHD_FILE: MSMg01no048_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:54 2005
(538 letters)
>mm_chr1_177566976_177567913
Length = 938
Score = 1007 bits (521), Expect = 0.0
Identities = 533/537 (99%)
Strand = Plus / Plus
Query: 1 tccagagcaacaagggttatgtctttctctcctttgccttgaggaaccacaaatgtgcaa 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tccagagcaacaagggttatgtctttctctcctttgccttgaggaaagacaaatgtgcaa 260
Query: 61 ataaacacagaatgtgaggaacttttaaggagaaacacaagcaaattaggaagctgtccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaacacagaatgtgaggaacttttaaggagaaacacaagcaaattaggaagctgtccc 320
Query: 121 atgtctgagttacactggggtgacaacaatgatgctccttaaaatatctcagacacctaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtctgagttacactggggtgacaacaatgatgctccttaaaatatctcagacacctaa 380
Query: 181 ggagaaggcacgggtcttcagctcccgaccttagaaccctccactcaggacatccttttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagaaggcacgggtcttcagctcccgaccttagaaccctccactcaggacatccttttc 440
Query: 241 cccccagatcctagggtcaacttttatctaggcaatggaccataccatggaagcagacct 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccccagatcttagggtcaacttttatctaggcaatggaccataccatggaagcagacct 500
Query: 301 cagccctccactgacttgtgcgagactctgtgcctagcgtagccagtgagacccacgtat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagccctccactgacttgtgcgagactctgtgcctagcgtagccagtgagacccacgtat 560
Query: 361 actacactgcttgttgtctgtaccaaatattgcgttttctaccaaaatgtctatgtatgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actacactgcttgttgtctgtaccaaatattgcgttttctaccaaaatgtctatgtatgt 620
Query: 421 acagaaccaaatgaaaatatgaaaaatatggttttgatttctaggttggagcactgaatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acagaaccaaatgaaaatatgaaaaatatggttttgatttctaggttggagcactgaatg 680
Query: 481 cctgctttcttgcaaagaggaattttcaagttgatgtgcacgaagctagggaaggta 537
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 681 cctgctttcttgcaaagaggaattttcaagttgatgtgtacgaagctagggaaggta 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
