Query= MSMg01no048_d11.b1 MSMg01no048_d11.b1 CHROMAT_FILE:
MSMg01no048_d11.b1 PHD_FILE: MSMg01no048_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:55 2005
(557 letters)
>mm_chr1_177723822_177724785
Length = 964
Score = 812 bits (420), Expect = 0.0
Identities = 470/490 (95%), Gaps = 7/490 (1%)
Strand = Plus / Minus
Query: 1 tgtgttgcatatgtggagctcagaagacccctttgtggagctac--ctctc-----tcca 53
||||||||||||| |||||||||||||| ||||||||||||| ||||| ||||
Sbjct: 490 tgtgttgcatatgcggagctcagaagacaattttgtggagctacttctctccttcttcca 431
Query: 54 gggtttgagctcaggttttcacacttgtgtggcaactaaatttgacacattgagctatct 113
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 430 gggtttgagctcaggttttcacacttgtgtggcaactaaatttgacacactgagctatct 371
Query: 114 ttctggtccctaatttgtacttttaaattgggatgcacaccctccatcccaaatcacttg 173
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 370 ttctggtccctaatttgtacttttaaattgggatgtgcaccctccatcccaaatcacttg 311
Query: 174 aactcttttgttaaattaaagctactgtttcacagtaaaaaactttaaggacattcaaag 233
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aactcttttgttaatttaaagctactgtttcacagtaaaaaactttaaggacattcaaag 251
Query: 234 cgatgccatagcatctttcagtaatttatatcattaaagtttgatattaaggttcagcca 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tgatgccatagcatctttcagtaatttatatcattaaagtttgatattaaggttcagcca 191
Query: 294 gtaaaggggcttgctgccaagcctggcaacctacatttgatccctgagacctgcatggtg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gtaaaggggcttgctgccaagcctggcaacctacatttgatccctgagacctgcatggtg 131
Query: 354 gaagaggtgactctcacaggtttccttctgactttctcatcactgccacggcatgcatgt 413
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 130 gaagaggtgactctcacaggtttccttctgactttctcattactgccacggcatgcatgt 71
Query: 414 acatgtatgcatgtacaattatacatatacgcagacaaataaagataataaaaatatttt 473
||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 70 acatgtatgtatgtacaattatacatatacacagataaataaagataataaaaatatttt 11
Query: 474 atatgctcta 483
||||||||||
Sbjct: 10 atatgctcta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 964
Length adjustment: 10
Effective length of query: 547
Effective length of database: 954
Effective search space: 521838
Effective search space used: 521838
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no048_d11.g1 MSMg01no048_d11.g1 CHROMAT_FILE:
MSMg01no048_d11.g1 PHD_FILE: MSMg01no048_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:55 2005
(731 letters)
>mm_chr1_177566978_177568108
Length = 1131
Score = 1390 bits (719), Expect = 0.0
Identities = 728/731 (99%)
Strand = Plus / Plus
Query: 1 cagagcaacaagggttatgtctttctctcctttgccttgaggaaagacaaatgtgcaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagcaacaagggttatgtctttctctcctttgccttgaggaaagacaaatgtgcaaat 260
Query: 61 aaacacagaatgtgaggaacttttaaggagaaacacaagcaaattaggaagctgtcccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacacagaatgtgaggaacttttaaggagaaacacaagcaaattaggaagctgtcccat 320
Query: 121 gtctgagttacactggggtgacaacaatgatgctccttaaaatatctcagacacctaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctgagttacactggggtgacaacaatgatgctccttaaaatatctcagacacctaagg 380
Query: 181 agaaggcacgggtcttcagctcccgaccttagaaccctccactcaggacatccttttccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaggcacgggtcttcagctcccgaccttagaaccctccactcaggacatccttttccc 440
Query: 241 cccagatcctagggtcaacttttatctaggcaatggaccataccatggaagcagacctca 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccagatcttagggtcaacttttatctaggcaatggaccataccatggaagcagacctca 500
Query: 301 gccctccactgacttgtgcgagactctgtgcctagcgtagccagtgagacccacgtatac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccctccactgacttgtgcgagactctgtgcctagcgtagccagtgagacccacgtatac 560
Query: 361 tacactgcttgttgtctgtaccaaatattgcgttttctaccaaaatgtctatgtatgtac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacactgcttgttgtctgtaccaaatattgcgttttctaccaaaatgtctatgtatgtac 620
Query: 421 agaaccaaatgaaaatatgaaaaatatggttttgatttctaggttggagcactgaatgcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaaccaaatgaaaatatgaaaaatatggttttgatttctaggttggagcactgaatgcc 680
Query: 481 tgctttcttgcaaagaggaattttcaagttgatgtgtacgaacctagggaaggtaagttg 540
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 tgctttcttgcaaagaggaattttcaagttgatgtgtacgaagctagggaaggtaagttg 740
Query: 541 gtcgtagaaaacaagagaaaagtttcttattccttgatctgtttctctagattttctgaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtcgtagaaaacaagagaaaagtttcttattccttgatctgtttctctagattttctgaa 800
Query: 601 taaaagacaaatgttttgattaaaaaaaaatttaagagataactattagaatgttttcaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 801 taaaagacaaatgttttgattaaaaaaaaatttaagagataactattagaatgtttttaa 860
Query: 661 aacttcagtgatctaaatttaatcaaataccaatatacacttgacatctttctatccatg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 aacttcagtgatctaaatttaatcaaataccaatatacacttgacatctttctatccatg 920
Query: 721 agttaatgagt 731
|||||||||||
Sbjct: 921 agttaatgagt 931
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 731
Length of database: 1131
Length adjustment: 10
Effective length of query: 721
Effective length of database: 1121
Effective search space: 808241
Effective search space used: 808241
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
