Query= MSMg01no048_e18.b1 MSMg01no048_e18.b1 CHROMAT_FILE:
MSMg01no048_e18.b1 PHD_FILE: MSMg01no048_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:05 2005
(280 letters)
>mm_chr1_55818707_55819385
Length = 679
Score = 474 bits (245), Expect = e-138
Identities = 263/269 (97%), Gaps = 1/269 (0%)
Strand = Plus / Plus
Query: 12 gtagaaaatacatgctagaatacatggcagactctatttgttgtctggtttatttggtgt 71
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 212 gtagaaaatacatgctagaatacacggcagactctgtttgttgtctggtttatttggtgt 271
Query: 72 cattctattgcctctctgcacctgcatttattcacccaaacacatcacaaaagccatatt 131
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 272 cattctattgcctctctgcacctgca-ttattcacccaaacacatcccaaaagccatatt 330
Query: 132 tccctctatataattgcttcataaggcaaagcatataaatatttacattttaggctttca 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tccctctatataattgcttcataaggcaaagcatataaatatttacattttaggctttca 390
Query: 192 aagcaaacaaacacacagcccctggcacattgctgctgcaagtctgtttcatctgtcttt 251
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 391 aagcaaacaaatacacagcccctggtacattgctgctgcaagtctgtttcatctgtcttt 450
Query: 252 tatgtttgtaaccacaaatttctcaacaa 280
|||||||||||||||||||||||||||||
Sbjct: 451 tatgtttgtaaccacaaatttctcaacaa 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 679
Length adjustment: 9
Effective length of query: 271
Effective length of database: 670
Effective search space: 181570
Effective search space used: 181570
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no048_e18.g1 MSMg01no048_e18.g1 CHROMAT_FILE:
MSMg01no048_e18.g1 PHD_FILE: MSMg01no048_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:05 2005
(585 letters)
>mm_chr1_55993374_55994358
Length = 985
Score = 901 bits (466), Expect = 0.0
Identities = 484/494 (97%), Gaps = 8/494 (1%)
Strand = Plus / Minus
Query: 1 atataaaacagagaaaacatcccacagcatttgcgtaggaaataaacatc----cccgtg 56
||||||||||||||||||||||||||||||||| |||||||||||||||| | |
Sbjct: 490 atataaaacagagaaaacatcccacagcatttgtgtaggaaataaacatcattgc----g 435
Query: 57 taaaataccatataaaattaaaggggtttgtgtcacataaaatgaaaattagcatttgta 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 taaaataccatataaaattaaaggggtttgtgtcacataaaatgaaaattagcatttgta 375
Query: 117 ctaataaaaattatcttttagggaaaattattagagactcaatcttatagaaagctattt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ctaataaaaattatcttttagggaaaattattagagactcaatcttatagaaagctattt 315
Query: 177 tcaataatttagaatggcatattaattacaaattttcaaagttacatttttccataagct 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tcaataatttagaatggcatattaattacaaattttcaaagttacatttttccataagct 255
Query: 237 gaaatatagaatttgatgagtataataaactttaaatgaaaagaaaataatttaagccag 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gaaatatagaatttgatgagtataataaactttaaatgaaaagaaaataatttaagccag 195
Query: 297 gcagtggtgatgcatgcttttaattccagcatttgagaggcagaggcatgtggatttctg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gcagtggtgatgcatgcttttaattccagcatttgagaggcagaggcatgtggatttctg 135
Query: 357 agttcgaggccagcctggtctacaaaatgagttccaggacagccagggatattcagagaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 agttcgaggccagcctggtctacaaaatgagttccaggacagccagggatattcagagaa 75
Query: 417 accctgtctcgaaaagccaaaaaaaattttttttaatgaaagaaagaaagaaagaaagaa 476
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 74 accctgtctcgaaaagccaaaaaaaaatttttttaatgaaagaaagaaagaaagaaagaa 15
Query: 477 agaaagaaagaaag 490
||||||||||||||
Sbjct: 14 agaaagaaagaaag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
