Query= MSMg01no048_j15.b1 MSMg01no048_j15.b1 CHROMAT_FILE:
MSMg01no048_j15.b1 PHD_FILE: MSMg01no048_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:44 2005
(596 letters)
>mm_chr1_131882257_131883252
Length = 996
Score = 884 bits (457), Expect = 0.0
Identities = 496/513 (96%), Gaps = 10/513 (1%)
Strand = Plus / Minus
Query: 1 atatggactcatccactggaccacaggaagcccatcagtgaccacatacccaacaaggaa 60
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 509 atatggactcatccactggaccacaggaagcctatcagtgaccacatattcaacaaggaa 450
Query: 61 agattctccctcccctcagacactaccacacaccagtaactccaagtaacagataataat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 agattctccctcccctcagacactaccacacaccagtaactccaagtaacagataataat 390
Query: 121 ggattccctgtcttgagaggacatttgggaggaaagtgaagttgttcttcctctattttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ggattccctgtcttgagaggacatttgggaggaaagtgaagttgttcttcctctattttc 330
Query: 181 tcccagagatgtctctgatggaacatctctattctcccttctgcttacaagagacttatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tcccagagatgtctctgatggaacatctctattctcccttctgcttacaagagacttatt 270
Query: 241 ttgtaagtgtggtttatagacacctatggatgattaagactgtttaagggatatcaaagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttgtaagtgtggtttatagacacctatggatgattaagactgtttaagggatatcaaagt 210
Query: 301 actatttccttaaaaaataaaaaat-----atttaaaaacccacagcatcaggaaccaga 355
||||||||||||||||||||||||| | ||||||||||||||| ||||||||||
Sbjct: 209 actatttccttaaaaaataaaaaataaaaaa---aaaaacccacagcattaggaaccaga 153
Query: 356 atgcaaaagcaagaagggctgttcatataaaataaatgcatcttaataaaaaaagagccc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 atgcaaaagcaagaagggctgttcatataaaataaatgcatcttaataaaaaaagagccc 93
Query: 416 -tgaagacaaactgcaggtccctaaaattaaccaaaaaatggcacccaacagcacagtta 474
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 92 ttgaagacaaactgcaggtccctaaaattaatc-aaaaatggcacccaacagcacagtta 34
Query: 475 gtcactgtacattttgcaactgaaaaccctatt 507
||||||||| ||||||||||||||||| |||||
Sbjct: 33 gtcactgtagattttgcaactgaaaactctatt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no048_j15.g1 MSMg01no048_j15.g1 CHROMAT_FILE:
MSMg01no048_j15.g1 PHD_FILE: MSMg01no048_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:44 2005
(690 letters)
>mm_chr1_131726181_131727275
Length = 1095
Score = 1162 bits (601), Expect = 0.0
Identities = 660/695 (94%), Gaps = 25/695 (3%)
Strand = Plus / Plus
Query: 1 gtaggcctcaaaacaatatcttttaaggccttacaggctgtaaacacgtgactaaaacaa 60
|||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||
Sbjct: 201 gtaggcctcaaaacaatatcttttaaggccaaacaggctgtaaagatgtgactaaaacaa 260
Query: 61 aaactaaataactcggttttaatccgggtatgtaggaagtgatgtaaaacctactgcagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaactaaataactcggttttaatccgggtatgtaggaagtgatgtaaaacctactgcagt 320
Query: 121 caattaaaatcaacgagctcttcaagtcttctgtttcctgggaggatatgaaaaaaaaa- 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caattaaaatcaacgagctcttcaagtcttctgtttcctgggaggatatgaaaaaaaaaa 380
Query: 180 ----ccaaaaaactggaactgaaagtaggaaagatgggagctcatggagcctttgaaatt 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaccaaaaaactggaactgaaagtaggaaagatgggagctcatggagcctttgaaatt 440
Query: 236 atgccaagaaggaatttggaagctaacactagaatagtaatactgggggtggattagaag 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgccaagaaggaatttggaagctaacactagaatagtaatactgggggtggattagaag 500
Query: 296 gagcacacatgaaaggcatttaaggaataagaaatcaatgccatccagtagctaatctta 355
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 gagcacacatgaaaggcatttaaggaaaaagaaatcaatgccatccagtagctaatctta 560
Query: 356 tataccacaaaatgcatcacaataagttgagagcactggttatagaccagtgaggactcg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tataccacaaaatgcatcacaataagttgagagcactggttatagaccagtgaggactcg 620
Query: 416 ctgatacagaagaaaaagaaaatatggcataaattattaatacaaaatgagctcatgaca 475
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 ctgatacagaagaaaaagaaaatatggcataaattatttatacaaaatgagctcatgaca 680
Query: 476 tatacacacggtgagagaggctgcatttgaatattattttagtgactcccgggttagcat 535
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 681 tatacacacggtgagagaggctgcatttgaatattattttagtgacttcagggttagcat 740
Query: 536 taaaaccaacctaacagatatcaagagtcacccatcattctctctctctctccatatata 595
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 741 taaaaccaacctaacagatatcaagagccacccatcattctctctctctctccatatata 800
Query: 596 tatacatacatatatatatatatatatttgaaactttatatttaaaagttgtagataata 655
|||| ||||||||||||||||||||||||||||||||||||
Sbjct: 801 tata--------------------tatttgaaactttatatttaaaagttgtagataata 840
Query: 656 tatactataatgtgattccacagtacaagtaaaaa 690
|||| ||||||||||||||||||||||||||||||
Sbjct: 841 tataatataatgtgattccacagtacaagtaaaaa 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1095
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1085
Effective search space: 737800
Effective search space used: 737800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
