BAC Information

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BAC

Clone NameMSMg01-048K15
Chromosome1 (Build37)
Map Location 48,560,740 - 48,561,305
singlet/doubletsinglet
Overlap geneLOC674566
Upstream geneLOC666869, LOC546734
Downstream geneLOC100041936, LOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048K15.T7 (MSMg01no048_k15.b1)MSMg01-048K15.TJ (MSMg01no048_k15.g1)
ACCAG278374AG278375
length1,2061,245
length of high quality
(start - end)		627 (73 - 699)588 (67 - 654)
definitionCHROMAT_FILE: MSMg01no048_k15.b1 PHD_FILE: MSMg01no048_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:51 2005CHROMAT_FILE: MSMg01no048_k15.g1 PHD_FILE: MSMg01no048_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATGCGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATCA
AACCTTCAAAGACCACTTGATACCACTACTCTTCAAACTATTCCACAAAA
TAGAACCTGAAGGAACGCTAGCTACCTCATTCTATGAGGCCACAGTTATG
CTACATATTGGTTTTTTTGTAGATGGAATGGTTTCTGTCTAATGAGATAC
TTGTCACAATTTCCTTTCAAAGAGGACTTAATAAGAAAAATTTTTCTACT
TCTATCATGTTTAATGTTTCAAATAGATTTTAAAAACTGGTTCAGTGCAT
ATGACTTTTAGCTTCAGAAGATATCATGTACATTTAAGAGGCCTTTAACT
GCTATAAATTAATCTGATTACTTAAAAAATTGTTAATACTGAGTTGTATA
CTTTAAAACAAATTTTATTAGTTTGATAAAAAAAATGCAGTGTTGTAGAT
TGTCTTCCCAACTGATACATCTACAACACAGCTCATGCATCGAAGACTCA
GAGATCAATCTCCAAAATGACTGGACTGAATTAAGAATGAGACGAATGGC
GAGTTTACTGTGAGATTATGACTTCTCGAAATGTCAGGAGCTATGTATAA
CTACACAAAATCTCATCAAAATGACTGACTAAACATGACTTTAACAATGG
TAACACTGATGGACATGCAAATATAGATGGCAAAAATCTCATGAGGCCTT
CATCTACATAAAGAACTATAAGGAACTAATGAATCCTGTAACCAGGAAAA
ATAGTCTTACCTAGGAAAGAGCCAAATAATTGTCTTGATACATATACCTA
GAAGTTAGATTATTCCAATTATTCAGATTTTATTTGTGTGTGTGTGGCCG
TTGCAAACAATAACTTAAAAAAGTGGTTATGATTTTGAAAGACCCCATTG
GTTGGAACATTTTTATAGGGATTTATTTTTCTTGTATCTCTCAATAATTT
ATAATAATTCTGTTTCTGTATCCATTTTATTTCTTAAGTTTTCCTTTCTT
TCCTATTTTTTTATAAATCCTTTATTCTTTTTTTTTTTCTTTCTTGCTTA
ACTATATTCTTTTAAATTCTTCTTTTCTCTTCTTTTTACTAATTCTGCTT
CTATTATTTCTTTCTTTGTTATGACTATATTCTATATTTATCTTTTATTT
TTTATTTATTCTTTAGTATTTCTTTTCATATTTTTTTCTTTTCTTTCTTT
ATTATT

TTTTTTAGATGGTAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTTTGAAAGGGGATGGAATAAAGAGCACTTCTT
GCTGGACCGATTCAGAAACCAATACCTGAATTTTAGAATTACAATTGTGA
AAGTTTGTTATCCGTAATCCCTGGTGCTTCACAGTGGATCTTACAAAGTC
TATTGCTCTCTCTATCCTGGAGGCATCAACTCACAGATAGTTCCATATTA
GGAATGTGAATATATCTATATCTATCTCTATATCTATCTCTATATCTATA
TCTACATCTATATCTACATCTATCTATATATGTGTGTAATTGTGTATATG
TACATGTATATGTATGTGCACATGTATATGTATATCAAGCATATATGTGT
CTCTAGGTGCCTATTATGACTGTATTCAGGTTGGAACATTGGCTTCAAAT
TTCAATGTGTGGAAACATTTGAAATCATGCTAACACTACATGTACTGACC
ATGATTTGAGTATTAAGTCACAACATTCTGTAAAAAGAAAATCCTGATAA
CCAAAGGTTGTATTCTACCTGTGCAAGACCATTTCTCTTATTGTGTCCTT
CCTTAGCTACTCGTCCTTCCTTATGGATGGTTGAGGATTTGTGGGTCTTC
CTCCAATCACTTAGGTTTGTCTGTTGTGTTTCTTCTGTCCATTTCTTGTA
TTGTCAAGCTTATGGCTGTTCTTTATATATGTAACTCCTGATATTATTAG
GATAATCTGTGTTCTATCAATCTGACATATTTTCTGCTTCTTAGATTTTT
TTTCCTATATCTTATAATCTATGTTCTTTGTTATTTTGTATTCTGTTTTA
TTCTTTTATTTGTTTTTTTTTTGTTTCCTTTCTTATTTTTCTGTTTTGTT
ATATTTTCTTTTTTTTCATTTCTCTTTTATTTTTTTTTTTCTACTTCATT
TTTTATTTATTTCTTCTTTTTATTTTACTTTATTTCCTTCCTTTTTTTTT
TTTTTTATTTTCTTATTTTTTTTTTTTTTATTTCTTATTTTTTATTATTT
TTTTCTTTTATTTATTTTTCTATTTTCTCTATTCTCTTTCTTATTTCTTT
TNTATTTTTCTTTTCTATTTCACTTTTATTTTTTATTTTTTGTATTTTAC
TATCTATTTTTTCTATATGTTATTATCTTTTATTATTCTATATCATTTAT
TTTATATTTTCTATATCATCTATTCTTTTAAATATTCTTAATATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_k15.g1 MSMg01no048_k15.g1 CHROMAT_FILE:
MSMg01no048_k15.g1 PHD_FILE: MSMg01no048_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:51 2005
         (588 letters)



>mm_chr1_48560318_48561305
          Length = 988

 Score =  988 bits (511), Expect = 0.0
 Identities = 553/567 (97%), Gaps = 2/567 (0%)
 Strand = Plus / Minus

                                                                       
Query: 23  agagcacttcttgctggaccgattcagaaaccaatacctgaattttagaattacaattgt 82
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 agagcacttcttgctggaaagattcagaaaccaatacctgaattttagaattacaattgt 929

                                                                       
Query: 83  gaaagtttgttatccgtaatccctggtgcttcacagtggatcttacaaagtctattgctc 142
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 gaaagttagttatccgtaatccctggtgcttcacagtggatcttacaaagtctattgctc 869

                                                                       
Query: 143 tctctatcctggaggcatcaactcacagatagttccatattaggaatgtgaatatatcta 202
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 868 tctctatcctggaggcatcaactcacagatagttacatattaggaatgtgaatatatcta 809

                                                                       
Query: 203 tatctatctctatatctatctctatatctatatctacatctatatctacatctatctata 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 tatctatctctatatctatctctatatctatatctacatctatatctacatctatctata 749

                                                                       
Query: 263 tatgtgtgtaattgtgtatatgtacatgtatatgtatgtgcacatgtatatgtatatcaa 322
           |||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 748 tatgtgtgtatttgtgtatatgtacatgtatatgtatgtatacatgtatatgtatatcaa 689

                                                                       
Query: 323 gcatatatgtgtctctaggtgcctattatgactgtattcaggttggaacattggcttcaa 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gcatatatgtgtctctaggtgcctattatgactgtattcaggttggaacattggcttcaa 629

                                                                       
Query: 383 atttcaatgtgtggaaacatttgaaatcatgctaacactacatgtactgaccatgatttg 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atttcaatgtgtggaaacatttgaaatcatgctaacactacatgtactgaccatgatttg 569

                                                                       
Query: 443 agta-ttaagtcacaacattctgtaaaaagaaaatcctgataaccaaaggttgtattcta 501
           |||| |||| | |||| ||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 568 agtagttaa-ttacaaaattctgtaaaaagaaaatcctgataaccaaaggttatgttcta 510

                                                                       
Query: 502 cctgtgcaagaccatttctcttattgtgtccttccttagctactcgtccttccttatgga 561
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 cctgtggaagaccatttctcttattgtgtccttccttagctactcgtccttccttatgga 450

                                      
Query: 562 tggttgaggatttgtgggtcttcctcc 588
           |||||||||||||||||||||||||||
Sbjct: 449 tggttgaggatttgtgggtcttcctcc 423


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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