BAC Information

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BAC

Clone NameMSMg01-048N05
Chromosome1 (Build37)
Map Location 144,009,063 - 144,009,692
singlet/doubletsinglet
Overlap genenone
Upstream geneEG226472
Downstream geneLOC639376, LOC545369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048N05.T7 (MSMg01no048_n05.b1)MSMg01-048N05.TJ (MSMg01no048_n05.g1)
ACCAG278489AG278490
length1,2631,263
length of high quality
(start - end)
631 (121 - 751)651 (116 - 766)
definitionCHROMAT_FILE: MSMg01no048_n05.b1 PHD_FILE: MSMg01no048_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:11 2005CHROMAT_FILE: MSMg01no048_n05.g1 PHD_FILE: MSMg01no048_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGGCGCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATTAACCAAATTCAAACCATATAATACTAATTACTTCTAAAATTAA
AATAATTACCACCTTATTGCATAGCTCCAAATGGACTGAAGGACATTTTG
TTAGGTCCATCAATAAACTAACATCTTGTCATGTATTAATAAGAGTCTAC
ATAACTGTTTCATTTTATGTAAAGAAATATTGGCTCATATTTTATTTTAG
CTGCATTCATCATAGTTTGGAGAACTAGTTTTTCACATCAACAGAAGAAA
TCTCTAATGAGTTATGATCAGTAAAAGGAATACAGATGTTCTGAACATCA
AATCCCTCTTTTCTCATTACTACAGCAGATGTTTGGCTGACAGTTTGAAT
AATGTTTTACTGTTCATTGTACATCACTTTTATAATTTATGGAAGTTTTA
GTGAAAGCTTCTAATATTCTTCTTTCTGTAGTCAGTGGACAAGAGCTTTG
GTCAGTATGTATGGCTTGCCTAGTATTCCTTAGTTCTGGGTTAATTCCTC
CAAATAATAAAAAGGCAAAACTAAGGCATGGGATGGTATACTCTTGGGGA
TTTGATTTTGAGGTTACCTGGGAATTCGAACATCTGCTGCAGGCCACAGT
AAACAGTTGGTCTTTTGACTGGTGAATAAAGAGCCAGCAGCCAATGCTTG
GGCAGGGGAACAGAAGGGGACCTTTGAGGATTTAAACAGAAGAAACACAG
AAGAGAGAAGGAGAAACACAAGGGCAGCAGGAAAGAAGAGGATACAAACA
TGAGAGCTGTGGAAGACAGAACCAACCATGTAAGACACAAGGGAAAGTGG
TCTCAGGGGCCACTCCCCCAACTTGCATTGCAGTAGTAGCGATAAAGTAT
AGATCTTAAAAAGCAATAACTCAAGAATTTTCGAAGGGGAAGGTGTGTTA
GCTGCGTGGAGATTTCCAAGTGGCCCCGCTAGGGAGCTTAGCTAAAGATA
TTAAAATATAAAAGGCGGAAGGTTTTTGTGTTTCTCCCCCCCCTTTTCGG
GAAAAATCTTGGGCCAAGCACCCCTAAATTGAAGTCGGAATCCGTCTCGG
GAAGTCTAAAATGGTTTATACAATTTTCCCCCCTAAAATAAAAAATTTTT
TTTCTTTTTCGAATAATCCCAATTTTATATATTGTTCCTTTTATCACTCT
CTTTAGGTCTAATATGTTTTTCTTGTGTCCTTTATAACATCTTCATAGTG
TCTTCTTTTATAA
TTTTGGCAGAAGTGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCTTTAAATCTTCCTTGNGCCGGNGATGGNAAC
CGTCCCGCCCTTTTCTCGTCCCGGCATTTCTCGTCCCAGGTCTTCTCGTC
CCAGGTCTTCTCGTCCCGGGTTTCAGCACCAACTCTTACACGTGTTCGCG
ACCGGCACGGAAAGACGCAACAAACCAGAATCTTCTGTGGCAAAGCTTTA
TTGCTTACATCTTCAGGAGCCAGAGAGCAAGAGAGCAAGAGAGCAAGAGT
GCAAGAGAGCAAGAGTGCAAGAAGAGAGCTAGAGAGCAAGAGCAAGAGCA
AGAGCCAGAGCAAGAGCAAGAGAGAGCAAGAAAGCAAGAAAAAGAACAAG
ATTTTTTTAGAAAGAATGGCAAAACCCCGTCCCTTTTAAGGAGAATTATC
CTCCGCCTAGGACGTGTCACTCCCTGATTGGCTGCAGCCCATCAGCCGAG
TTGTCGTCACGAGAAAGGCAGAACACATGGCAGGAAAACTGCCCCTGCAC
GTGTGCAGATTATGTTTACCACTTAGAACACAGCTGTCAGCGCCATCTTA
TACCCGCAAATGTGAGGGCGGCTCCTCACATGAAGAACTGTTTTAAAGAG
TTGCAGAATTAGGAAGGTTGAGAACCACTGCTCTAGAGGGAACAAAGAAC
AGCGGTTCTGCTTGTAAGAGGCTCAGACCAGCACCTGCTAAGACAAGGCA
GCCTGTGGGCTGTGCAGTGAGCTTTTGTGACCTGCCACCCATGCTGGGAT
GGGCTTTGGTGATGCAGTTGTATTTGAATCTCGTTATTTTGTGTGCAGTT
TTTTTTCTTCAGAACACAGAATGGCCTTCCTCTTAACATTATTTAGACAG
ACTGTTAAGGACAAAGGAAGGTAGGGAGAGCTGAAAGGGAAACATAGACC
CAAGCATGATCATTGGAAAATTTCTTACCGCAAACATTAAATTCTGCATC
TTTTTAAATTGAAGGGGCCCCATAATCAGTTCTGGGTATCCTAATTACAT
AATAAAATTGTCCCCTAAGTTTTTCATTCCTTGGGACTTTTCAACTTGAA
AATAGGGTTTTTCATATCCAAACTCTTGGTATTTTTGGGGGGGCCAAAAA
TTGGTTGGGGGAATAATATTGTGGTAAATTCTGGGCGCGGGAATTTTTCG
GGGGAACTTTCTTTTGATGGGGCCTGTAGCATATATAAATGGTAGTTTTT
ATTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_n05.b1 MSMg01no048_n05.b1 CHROMAT_FILE:
MSMg01no048_n05.b1 PHD_FILE: MSMg01no048_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:11 2005
         (631 letters)



>mm_chr1_144008961_144009990
          Length = 1030

 Score = 1197 bits (619), Expect = 0.0
 Identities = 628/631 (99%), Gaps = 1/631 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagctccaaatggactgaaggacattttgttaggtccatcaataaactaacatcttgtc 60
           ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 732 atagctccaaatggactgaaggaaattttgttaggtccatc-ataaactaacatcttgtc 674

                                                                       
Query: 61  atgtattaataagagtctacataactgtttcattttatgtaaagaaatattggctcatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atgtattaataagagtctacataactgtttcattttatgtaaagaaatattggctcatat 614

                                                                       
Query: 121 tttattttagctgcattcatcatagtttggagaactagtttttcacatcaacagaagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tttattttagctgcattcatcatagtttggagaactagtttttcacatcaacagaagaaa 554

                                                                       
Query: 181 tctctaatgagttatgatcagtaaaaggaatacagatgttctgaacatcaaatccctctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tctctaatgagttatgatcagtaaaaggaatacagatgttctgaacatcaaatccctctt 494

                                                                       
Query: 241 ttctcattactacagcagatgtttggctgacagtttgaataatgttttactgttcattgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ttctcattactacagcagatgtttggctgacagtttgaataatgttttactgttcattgt 434

                                                                       
Query: 301 acatcacttttataatttatggaagttttagtgaaagcttctaatattcttctttctgta 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agatcacttttataatttatggaagttttagtgaaagcttctaatattcttctttctgta 374

                                                                       
Query: 361 gtcagtggacaagagctttggtcagtatgtatggcttgcctagtattccttagttctggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gtcagtggacaagagctttggtcagtatgtatggcttgcctagtattccttagttctggg 314

                                                                       
Query: 421 ttaattcctccaaataataaaaaggcaaaactaaggcatgggatggtatactcttgggga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttaattcctccaaataataaaaaggcaaaactaaggcatgggatggtatactcttgggga 254

                                                                       
Query: 481 tttgattttgaggttacctgggaattcgaacatctgctgcaggccacagtaaacagttgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tttgattttgaggttacctgggaattcgaacatctgctgcaggccacagtaaacagttgg 194

                                                                       
Query: 541 tcttttgactggtgaataaagagccagcagccaatgcttgggcaggggaacagaagggga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tcttttgactggtgaataaagagccagcagccaatgcttgggcaggggaacagaagggga 134

                                          
Query: 601 cctttgaggatttaaacagaagaaacacaga 631
           |||||||||||||||||||||||||||||||
Sbjct: 133 cctttgaggatttaaacagaagaaacacaga 103


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1030
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1020
Effective search space:   633420
Effective search space used:   633420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)