Query= MSMg01no048_p11.b1 MSMg01no048_p11.b1 CHROMAT_FILE:
MSMg01no048_p11.b1 PHD_FILE: MSMg01no048_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:29 2005
(821 letters)
>mm_chr1_143559893_143561111
Length = 1219
Score = 1413 bits (731), Expect = 0.0
Identities = 790/815 (96%), Gaps = 12/815 (1%)
Strand = Plus / Plus
Query: 12 gaattcacatgttgggtagactgcattt----aaagaggaatactctttcattgctggag 67
||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 212 gaattcacatgttgggtagactg----tggagaaagaggaatactctttcattgctggag 267
Query: 68 agagttgcctactggtacaaccactgtggtaaccaatctcacgatttctcagaaaattgt 127
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agagttgcaaactggtacaaccactgtggtaaccaatctcacgatttctcagaaaattgt 327
Query: 128 caatagctctacctgaacacccagctaatatgcccaaaggttgttccaccatagcgcaag 187
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 328 caatagctctacctgaacacccagctaatatacccaaaggttgttccaccatagcgcaag 387
Query: 188 gacacatgctccactatgttctgagcagccttatttattatagaaatatccagacactaa 247
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 388 gacacatgctccactatgttctgagcagccttatttattatagaaatgtccagacactaa 447
Query: 248 aaatagccaagatgtacctcaaatatagaatggatacagaaaatgttgtaaatttacaca 307
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 448 aaatagccaagatgtacctcaaatatagaatggatacagaaaatgttgtacatttacaca 507
Query: 308 ctggactactaagatacacagacctacatacactatacatcataaaaatactcagaagta 367
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 508 ctggactactaagatacgcagacctacatacagtatacatcataaaaatactcagaagta 567
Query: 368 atgaagtgttataaaagcagcacgtttttttattaacatgcacaaaataattggtgatat 427
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 568 atgaagtgttataaaagcagcacatttttttattaacatgcacaaaataattggtgatat 627
Query: 428 tggaaaaagtgatcaatttgatgaagagaaaaatataaatactcctcaataactcaactt 487
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 628 tggaaaaagtgatcaatttgatgaagagaaaaatataaatactcat---taactcaactt 684
Query: 488 ttatggttgtaaggtttttagtttttaaattaaaaa-cctcatcattataaatttttact 546
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 685 ttatggttgtaagttttttagtttttaaattaaaaaacctcatcattataaatttttact 744
Query: 547 acaaaataaataaaaattaaatgtgtaaaagataataaattaagacataagcaaaagcag 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acaaaataaataaaaattaaatgtgtaaaagataataaattaagacataagcaaaagcag 804
Query: 607 aaaaatgcattaaaattaaatgcaacttagaaagagaaataaatataacacagcagttgg 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 805 aaaaatgcattaaaattaaatgcaacttagaaagagaaataaatataacacagcattttg 864
Query: 667 atgagaacattctatgctctgtgtacatttttattgataataataaaacagggtctttat 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 atgagaacattctatgctctgtgtacatttttattgataataataaaacagggtctttat 924
Query: 727 attttcagatttactaaataagaactattttgacaaaacttattctctgattacccttat 786
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 atgttcagatttactaaataagaactattttgacaaaacttattctctgattacccttat 984
Query: 787 aacaacagttacaatgctatggtcacaattttgat 821
|||||||||||||||||||||||||||||||||||
Sbjct: 985 aacaacagttacaatgctatggtcacaattttgat 1019
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 821
Length of database: 1219
Length adjustment: 10
Effective length of query: 811
Effective length of database: 1209
Effective search space: 980499
Effective search space used: 980499
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no048_p11.g1 MSMg01no048_p11.g1 CHROMAT_FILE:
MSMg01no048_p11.g1 PHD_FILE: MSMg01no048_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:29 2005
(702 letters)
>mm_chr1_143639625_143640726
Length = 1102
Score = 1048 bits (542), Expect = 0.0
Identities = 555/562 (98%), Gaps = 6/562 (1%)
Strand = Plus / Minus
Query: 141 tttataaaagctaaaatatcaaatcaaatacaattgcctcaaatttggatgtgatcagac 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1102 tttataaaagctaaaatatcaaatcaaatacaattgcctcaaatttggatgtgatcagac 1043
Query: 201 tatttaaaataattggtgactattatactttgattaattttatcacctaaatattttgtc 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042 tatttaaaataattggtgactattatactttgattaattttatcacctaaatattttgtc 983
Query: 261 taggaaaccaggaaaggggataacatttgaaatgtacataaatacaatatccaataaaaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 taggaaaccaggaaaggggataacatttgaaatgtacataaatacaatatccaataaaaa 923
Query: 321 tatactgaataattataaaaatgttcttttttttgttattctctgcctttgtcataaact 380
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 922 tatactgaataattat--aaat----ttttttttgttattctctgcctttgtcataaact 869
Query: 381 aactattctccttcagactagaaatttctgaaatgttttcctgttttaccttctgctaaa 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 aactattctccttcagactagaaatttctgaaatgttttcctgttttaccttctgctaaa 809
Query: 441 ggaggtaacattttaaccaattgccactgactttcaaaattttccatctaactaaaacaa 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 ggaggtaacattttaaccaattgccactgactttcaaaattttccatctaactaaaacaa 749
Query: 501 agcacctctccttttctgtagacatgccccaggggtcctcagcagtatctgaacagctct 560
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 748 agcacctctccttttctgtagatatgccccaggggtcctcagcagtatctgaacagctct 689
Query: 561 gttcactcccaaactgaaaggtgacacgaagtacatctatcttgctccttaacttcttta 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gttcactcccaaactgaaaggtgacacgaagtacatctatcttgctccttaacttcttta 629
Query: 621 ttcacagaaagaagaatatgaattatattcccaggcatattcaactgtgagaatcaaaca 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttcacagaaagaagaatatgaattatattcccaggcatattcaactgtgagaatcaaaca 569
Query: 681 gaatatttgattgtgctttgaa 702
||||||||||||||||||||||
Sbjct: 568 gaatatttgattgtgctttgaa 547
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space: 755664
Effective search space used: 755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
