BAC Information

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BAC

Clone NameMSMg01-049B05
Chromosome1 (Build37)
Map Location 26,332,173 - 26,332,888
singlet/doubletsinglet
Overlap genenone
Upstream geneBai3, LOC665595
Downstream gene4931408C20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049B05.T7 (MSMg01no049_b05.b1)MSMg01-049B05.TJ (MSMg01no049_b05.g1)
ACCAG278665AG278666
length1,2151,247
length of high quality
(start - end)		737 (51 - 787)717 (78 - 794)
definitionCHROMAT_FILE: MSMg01no049_b05.b1 PHD_FILE: MSMg01no049_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:42 2005CHROMAT_FILE: MSMg01no049_b05.g1 PHD_FILE: MSMg01no049_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGGTTCNNNNNNNGCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCCCTGTGCTGGGGCATACCAAAGTTTGCATGTCCAATGGG
CCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAG
CTAGAGTCAAGAGCTCCAGGGTACTGGTTAGTTCATAATGTTGATCCACC
TATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTC
CATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTC
TGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGG
TCCTTTCAATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGAT
GCTGATTATGGGGTGGATCCCTGGATATGGCAGTCTCTACATGGTCCATC
CTTTCATCTCAGCTCCAAACATTGTCTCCGTAACTCCTTCCATGGGTGTT
TTGTTCCCAAATCTAAGGAGAGGCATAGTGTCCACACTTCAGTCTTCATT
CTTCTTGAGTTTCATGTGTTTAGCAAATTATATCTTATATCTTGGGTATC
CTGGGTTTGGGGCTAATATCCACTTATCAGTGAATACATATTGTGTGAGT
TTCTTTGTGAATGTGTTACCTCACTCAGGATGATGCCCTCCAGGTCCATC
CATTTGCCTAGGAATTTCATAAATTCATTCTTTTTAATCGCTGAGCAGTA
CTCCATTGTGTAGATGTACCATATTTTCTGTATCCATTCCTCTGTTGAGG
GGCATCTAGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATG
AACATAGTGGAGCATGTCTCCTTCCTACCTGTTTGGGGCATCTTCTGGAT
ATATGCCCCAGAAGAGGTATTGTTGGAACCTTCGGACACACTATGTTCAG
TTTTTCTGAAGAACCCGCACATTGTATTTCCGAATGGTTTTTACAATTCT
GTCTCTTCACCAACTATGTAAGAATGTTTCTTTTTTCTCTACTTTCNCCT
CCAATATTGCTGTTCACCGAATTTTTTACTTTTACATTTTTTATTGGTGT
TGGTAGGAACTCTCTGCTATGTTTTTATTTCTCTTCCCCTGTATCATTAA
GATCTGCAATCCTTATTTCCTGGCCTTCTTCTCTTTTTTATATCCCTATC
GTGTTAAATTCTTTG

CTTTTTTANNNNATTGGATGGNAGGCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTATGGTTGTAACGATGCTGA
GGGAATGATTGTTTAATAAACTGCTATCAGAAACACAGAATAAACAAAGT
TATTAAAACCAAGTTATTAAAAAATTAAATATGGCTAAATCCTTTGAATT
TTTGTATTGATTAAATCAACAGTATGACAGATATTATATTATAGAAAATA
TAGGTTGACATAATAAAGACCTATGATACATTGATTATATTTAAAGGTAT
AGCAAATGTGCTATAAAATTGTAATATGTAATTTTAAAAATTAGAGTTCT
GTATATGTTTTACCTATGGATATAACCAAGTTCATATTTTTTATCCTTTT
AAAGTGAAGCATTTTTGGTAGTTTAAAACTTTTTTTGCTTTGTTCTACAA
CAGGCTTAAAATAATATTTAAATAATCAAAATCTATAGTGAATATATCAT
TTTAAAATATGTATATGCAATAAGTTTGTAAGATATAGGGACTTTTTTCT
TTTTAAAAAAATTTATTATTAGATGTTTTCTTCATTTACATTTCAAATAT
TATCCCCTTTTCAAGTTTCCTCTCTGAAAATTCCCTATACCCTCCCTCCT
TCCCCTACTCCCCAATCCATCCACTCCTACTTCCTGGCCCTGATATTCCC
CTGGTATTGCGAAGATTCTAGGCCATTTTTTCAAGAGTGGGCAAAATGTT
TTAGAATTAGAAGAATCTTTACTTACTTATTCCCTCAATATCAAATAGCA
GCTGTAGGTATCTGACATTAAGAGAAATGATTCCATAAGAGACATCAAAT
GTACGAAGTAGAATTAGCTATTATTTAGTACGAACAGAATTATTGATTCG
GCTTCATTTAATATCTAGAACAGACTTATCCCAGAAAATTGAAAAAAATT
GCAGAAAAAACTGGGCACCAAGCCCTAGGGATAAAAAAATAATTGCACCT
GGTGCTTTGAAAATGGAACATTTAGGCACGCAAATTCTTACGAAATGGGT
TTTCCAAAAAGTTACAACAAAATCCAAAATCTGAACCTGTGTTGGATTTT
AAAAAAAGACCCTTCCCGGGCAAAAAAAAACTTTTTTTTTGTTTCGTTAT
TTTTTCTGAAAGAACCCCTCCAAGGGTGGCCTATAACATAGTGGCTTCCC
CTCTCCCATATTTTTTTCGTGGCCCTTGTATTGCTGTCTCCAACGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_b05.g1 MSMg01no049_b05.g1 CHROMAT_FILE:
MSMg01no049_b05.g1 PHD_FILE: MSMg01no049_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:42 2005
         (717 letters)



>mm_chr1_26331972_26333088
          Length = 1117

 Score = 1286 bits (665), Expect = 0.0
 Identities = 704/717 (98%), Gaps = 2/717 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   tctatggttgtaacgatgctgagggaatgattgtttaataaactgctatcagaaacacag 61
           |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tctatggttgtaacgatgttgggggaatgattgtttaataaactgctatcagaaacacag 261

                                                                       
Query: 62  aataaacaaagttattaaaaccaagttattaaaaaattaaatatggctaaatcctttgaa 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aataaacaaagttattaaaaccaagttattaaaaaattaaatatggctaaatcctttgaa 321

                                                                       
Query: 122 tttttgtattgattaaatcaacagtatgacagatattatattatagaaaatataggttga 181
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 322 tttttgtattgattaaatcaacaatatgacagatattatattatagaaaatataggttga 381

                                                                       
Query: 182 cataataaagacctatgatacattgattatatttaaaggtatagcaaatgtgctataaaa 241
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cataataaagacctatggtacattgattatatttaaaggtatagcaaatgtgctataaaa 441

                                                                       
Query: 242 ttgtaatatgtaattttaaaaattagagttctgtatatgttttacctatggatataacca 301
           |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 442 ttgtaatatgtaattttaaaaattagagttctatatatattttacctatggatataacca 501

                                                                       
Query: 302 agttcatatttttt-atccttttaaagtgaagcatttttggtagtttaaaactttttttg 360
           |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 502 agttcatatttttttatccttttaaagtgaagcatttttggtagtttagaactttttt-g 560

                                                                       
Query: 361 ctttgttctacaacaggcttaaaataatatttaaataatcaaaatctatagtgaatatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttgttctacaacaggcttaaaataatatttaaataatcaaaatctatagtgaatatat 620

                                                                       
Query: 421 cattttaaaatatgtatatgcaataagtttgtaagatatagggacttttttctttttaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cattttaaaatatgtatatgcaataagtttgtaagatatagggacttttttctttttaaa 680

                                                                       
Query: 481 aaaatttattattagatgttttcttcatttacatttcaaatattatccccttttcaagtt 540
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 aaaatttattattagatgttttcttcattcacatttcaaatattatccccttttcaagtt 740

                                                                       
Query: 541 tcctctctgaaaattccctataccctccctccttcccctactccccaatccatccactcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcctctctgaaaattccctataccctccctccttcccctactccccaatccatccactcc 800

                                                                       
Query: 601 tacttcctggccctgatattcccctggtattgcgaagattctaggccattttttcaagag 660
           |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 801 tacttcctggccctgatagtcctctggtattgcgaagattctaggccattttttcaagag 860

                                                                    
Query: 661 tgggcaaaatgttttagaattagaagaatctttacttacttattccctcaatatcaa 717
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 861 tgggcaaaatgttttagaattagaagaatctttagttacttattccctcaatatcaa 917


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1117
Length adjustment: 10
Effective length of query: 707
Effective length of database: 1107
Effective search space:   782649
Effective search space used:   782649
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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