BAC Information

Click to search

BAC

Clone NameMSMg01-049F07
Chromosome1 (Build37)
Map Location 144,457,211 - 144,457,711
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639376
Downstream geneLOC545369, Cdc73
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049F07.T7 (MSMg01no049_f07.b1)MSMg01-049F07.TJ (MSMg01no049_f07.g1)
ACCAG278826AG278827
length1,3141,297
length of high quality
(start - end)
548 (78 - 625)499 (78 - 576)
definitionCHROMAT_FILE: MSMg01no049_f07.b1 PHD_FILE: MSMg01no049_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:14 2005CHROMAT_FILE: MSMg01no049_f07.g1 PHD_FILE: MSMg01no049_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTACTATGGGGCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTCTT
TGTTCAGTTCTGAGCCCTTTTTTTTAATGGGGTTATTTGCTTTTCTGAAG
TCCACCCTCTTGAGTTCTTTCCACATGTTGGATATTAGTCCCCTATCTGA
TTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCT
TACTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCC
CATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAG
GAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCT
CTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCCATTTA
TATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCT
ACATGATAACAACCAGTTGCGCCAGCACCAATTGCTGAAAATGCTGTCTT
TCTTTCACTGGATGCATTTAGCTCCCTTGTCGAAGATCCAGTGACCATAG
GTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTG
TCTGTCTCTATACCCGTACCATGCAGATTTTACCACACTTGCTCTGTAAT
AAAGCTTCAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTG
AGAAGAGTTTTTGCTATCCTAGTGTTTTTGTTATTCCAAATGATCTTGCA
ACTTGCTCCTTCTAATTTCTTTTGAAGAATTGATTTGCAATTTTGATGAG
AATTTCTTTGTAACCGTTAATTTGATTTTTGCTTCTATATCACTTTTTTT
CTTGTTGATTTCTCCTCTTCTCCGTTTCCTTTCTATTCTCTTTCTTTTCT
TCGTATATCTTCCTTTACTTTTCCCTCTTTCCCTTCCTTTATCTTTACTT
CTCTTATCCATCTTTTTTCTCTCTACTTTTATATCTCTTTTATTTCCATT
CTATATTTTTTTTTCTTTTATTCTACTTTATGTATTCATTTCTCTATTTT
TTTCTTTTTTATTCTTCTTTTCTTTTGTTCTTTTTCTTTCATTTATCATT
CTTTTTATCTGTATCATTATCTGATCTTTCTTTTCCCTTTTTTATCTTCT
TTCTTTGTCTTTCTTTCTCTATTTTCTATATTTCTGTTCTTACTTTTATT
TCTTTATTACTATTTATTTTCCATTATTATCTTCCTCTACTGTACTTACC
ATCTATCTACTTACTTATACTTATCTTTATATCTCTCTAAACTTATACAT
CTGTATCTGTCTAT
TTTTTCACACGTGAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCCTTTACAAACATGTTCTAAAACACATACAGA
AAGGATTTATACGAAAAGATTCATGCCCGTTTTAATCAACATCATGCAAC
GCTCAAAAAAAAATAGTTTTCTAACACAATGGGAAAAAAGCTTGATAGAT
AAAGAAATGATTCCTGTTACTGGAATAGAAAGAAAAGAATGTGCTACGTG
TGTAACCCAACATGTACATTCATTTGATGAAAATACCCAGAATTACACAT
GAATGTTTTGCTTTCTTTTTTTTAATTTATTTATTTATTTTAAACTCCAG
ATTTTATACCCATCCCTGGTCCACCCTCCAACTGTTCCACATCACATACC
TCCTCACTGCCCCCTAGTCTCCACAAGGATGTCCTCACCCCACACCCCCA
CACCACCCACCAGAACTCTAAACTCCCTAAGGCTTCCCGCCCCGTGAGCA
TTAAGTGCACCTTCTCTGACAAAACCCAGACCCTAGCCTTCTTCTACTGT
ATATGCCTTGGGGACCTCATAGCACTTGAGGTACGCCGCCTGGTAGGTGC
TTCACTATCTGAGACATCTCCTGGGTCCAGCTTACTTGACACAGCTTGTT
CTCCTACCGACTCACCCTTCTCAACTTCTTCCAGCCTTCCCCTAATTCAA
CCACAGGGTTCAGCACGCTTCTGTCCATCGCTTGAGTGCAAATTCATCTG
CATCTAAATTTTTCAGCTGTTTGTTGGATCTTCCCGACGGCAGTCATCAT
AGGTCCACTCTTGTGAGCACTTCCACCACCTTCCTAATAAAGTCCTGTCT
TGGAAACTCCTCCTTGAAATCGTTCCAAGTTTGGTCCTGTTGCCTGCACC
TTCCTTTCCTTAGGCTCCCTTTCTACTTCCATCCCTGTAAGTTCTTTTCT
AACATAACAAATAATTTGTCCAACCTTTCAACTTGTTCATTAAACCCCCA
CTTCCTTCATATAAGTCCCGTTCTTCTTGCTGAATTGGTTCTTGTACAAT
TCCCTTCTTCCCCATCAATATAATTTCTCCTTCAGATCCCTCTTTTTTTA
ATCTCGTTATATTTCTTATCTCCCAAGTATCCTGTGAATATTTTTGAGAA
ATTATTTCTTTCTTCTTCTAAACTTATTATATTTTTCTGAGTATATATTT
TATATTCGAATCTCATAATATAACTTGCCATACACTACCACCCGCAAAAT
ATAACATTACATGCTCCTACGCTCATTTCATATATACTACTATTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_f07.g1 MSMg01no049_f07.g1 CHROMAT_FILE:
MSMg01no049_f07.g1 PHD_FILE: MSMg01no049_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:14 2005
         (499 letters)



>mm_chr1_144457011_144457909
          Length = 899

 Score =  801 bits (414), Expect = 0.0
 Identities = 479/502 (95%), Gaps = 4/502 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatgttctaaaacacatacagaaaggatttatacgaaaagattcatgcccgttttaatc 60
           |||||||||||||||||||||||||||||||||| |||||||||||||   ||||| |||
Sbjct: 201 acatgttctaaaacacatacagaaaggatttatatgaaaagattcatggtagttttgatc 260

                                                                       
Query: 61  aacatcatgcaacgctcaaaaaaaaatagttttctaacacaatgggaaaaaagcttgata 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 261 aacatcatgcaacgctcaaaaaaatatagttttctaacacaatgggaaaaaagtttgata 320

                                                                       
Query: 121 gataaagaaatgattcctgttactggaatagaaagaaaagaatgtgctacgtgtgtaacc 180
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gataaagaaatgatacttgttactggaatagaaagaaaagaatgtgctacgtgtgtaacc 380

                                                                       
Query: 181 caacatgtacattcatttgatgaaaatacccagaattacacatgaatgttttgctttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 caacatgtacattcatttgatgaaaatacccagaattacacatgaatgttttgttttctt 440

                                                                       
Query: 241 tttttt---aatttatttatttattttaaactccagattttatacccatccctggtccac 297
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttttttaaatttatttatttattttaaactccagattttatacccatccctggtccac 500

                                                                       
Query: 298 cctccaactgttccacatcacatacctcctcactgccccctagtctccacaaggatgtcc 357
            ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctccaacagttccacatcacatacctcctcactgccccctagtctccacaaggatgtcc 560

                                                                       
Query: 358 tcaccccacacccccacaccacccaccagaactctaaactccctaaggcttcccgccccg 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |  |
Sbjct: 561 tcaccccacacccccacaccacccaccagaactctaaactccctaaggcttccagtcttg 620

                                                                       
Query: 418 tgagcattaagtgcaccttctctgacaaaacccagaccctagccttcttctactgtatat 477
           ||||||||| |||||||||||||||||||||||||||| ||||  |||||||||||||||
Sbjct: 621 tgagcattaggtgcaccttctctgacaaaacccagacc-tagcagtcttctactgtatat 679

                                 
Query: 478 gccttggggacctcatagcact 499
           ||||||||||||||||||||||
Sbjct: 680 gccttggggacctcatagcact 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)