Query= MSMg01no049_i15.b1 MSMg01no049_i15.b1 CHROMAT_FILE:
MSMg01no049_i15.b1 PHD_FILE: MSMg01no049_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:39 2005
(370 letters)
>mm_chr1_57946674_57947445
Length = 772
Score = 601 bits (311), Expect = e-176
Identities = 348/363 (95%), Gaps = 8/363 (2%)
Strand = Plus / Plus
Query: 13 ggaattcagagggcgtttaagcctgcgtgtagtttgttttttgtcttttggg-ttttttt 71
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 213 ggaattcagagggcgtttaagcctgagtgtagtttgttttttgtcttttggggttttttt 272
Query: 72 -ttctatcctttagaacttttaataacagcccacaccctttacacagtccaatcaaaacc 130
|||||| ||||||| ||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 273 cttctatattttagaagttttaataacagctcagatcctttacacagtccaatcaaaacc 332
Query: 131 atcctgttttcaaatcttaagtcaggcaaagaggagacagaggtttattcttcactaaga 190
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 333 atcctgttttcaaatcttaagtcaggcaa---ggagacagaggtttattcttcactaaga 389
Query: 191 gcagcactaaagatagtaatttttaccccctaaggcctccaatctaaatgtctaaacacc 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gcagcactaaagatagtaatttttaccccctaaggcctccaatctaaatgtctaaacacc 449
Query: 251 ttggagtctggtttc---caagccttcctccttctctgatttcgagccttatctctgttt 307
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ttggagtctggtttcacccaagccttcctccttctctgatttcgagccttatctctgttt 509
Query: 308 gggctagaataggaaatcacattcctctctctttctccagctggacacatgcccatggag 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gggctagaataggaaatcacattcctctctctttctccagctggacacatgcccatggag 569
Query: 368 gag 370
|||
Sbjct: 570 gag 572
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 772
Length adjustment: 9
Effective length of query: 361
Effective length of database: 763
Effective search space: 275443
Effective search space used: 275443
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no049_i15.g1 MSMg01no049_i15.g1 CHROMAT_FILE:
MSMg01no049_i15.g1 PHD_FILE: MSMg01no049_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:39 2005
(280 letters)
>mm_chr1_57991959_57992638
Length = 680
Score = 491 bits (254), Expect = e-143
Identities = 266/270 (98%)
Strand = Plus / Minus
Query: 1 gaagggctcattgattggatgggcccattagtggaaaggaaatcaaaataagaactggag 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 447 gaagggctcattgattggatgggcccattaatggaaaggaaatcaaaataagaactgaag 388
Query: 61 ttcctgtcccactcaagattgtctaggtttagggctgggaagctggctctgtgggtaaag 120
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 387 ttcctgtcccactcaagattgtctaggtctagggctgggaagctggctctgtgggtaaaa 328
Query: 121 tgttaaacatatccagatctccagctctcatgtgaaaagctgggcaaggctgtgcttgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgttaaacatatccagatctccagctctcatgtgaaaagctgggcaaggctgtgcttgtc 268
Query: 181 agtatcctcaaaaactaggctggggaatgttaggggaggaggacattctatactgagctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agtatcctcaaaaactaggctggggaatgttaggggaggaggacattctatactgagctc 208
Query: 241 catactctgtgtgtgtgtgtgtgtgtgtgt 270
||||||||||||||||||||||||||||||
Sbjct: 207 catactctgtgtgtgtgtgtgtgtgtgtgt 178
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
