Query= MSMg01no050_h01.b1 MSMg01no050_h01.b1 CHROMAT_FILE:
MSMg01no050_h01.b1 PHD_FILE: MSMg01no050_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:45 2005
(582 letters)
>mm_chr1_178881537_178882516
Length = 980
Score = 1056 bits (546), Expect = 0.0
Identities = 573/582 (98%), Gaps = 2/582 (0%)
Strand = Plus / Minus
Query: 1 aagatagaagtgaaacaaattaaaccaaccattatatataacgagaccccatggactccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 aagatagaagtgaaacaaattaaaccaaccattatatataacgagaccccatggactccc 721
Query: 61 attgttcctcttaattacaaaacgcaaatcacgaatacacaatggccagtgctagacatc 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 720 attgttcctcttaattacaaaacgcaaatcacgaatacacaatgggcagtgctagacatc 661
Query: 121 aatccacaggcctagcaactcagcaagtcacaatgacaggaaaacgaagagaagcaaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 aatccacaggcctagcaactcagcaagtcacaatgacaggaaaacgaagagaagcaaaat 601
Query: 181 cacacagagccaggtctctgctccttcctgtccttctagcaggcaaggagagggagaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 cacacagagccaggtctctgctccttcctgtccttctagcaggcaaggagagggagaggg 541
Query: 241 gggctgagacccagccgaactatgcttgatctccaacatgcactgactctgtcggcgtgg 300
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 540 gggctgagacctagccgaagtatgcttgatctccaacatgcactgactctgtcggcatgg 481
Query: 301 gctccggctcatctctagccagcacccaaaattccctaggttgtcccagaacaggtttta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gctccggctcatctctagccagcacccaaaattccctaggttgtcccagaacaggtttta 421
Query: 361 gatcacagtgcaaacgtgcctgtcacattttaatgtggattttccaaatgtctaggcaga 420
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 420 gatcacagtgcaaacgtgcctgtaacattttaatgtggattttccaaatgtctagggaga 361
Query: 421 atacttacttctttcactttgacaaagaaaaataaatctgtatcaaagatatttaagtat 480
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 360 atacttacttctttcactttgacaaagaaaaataaat-tgtatcaaagatatttaagtat 302
Query: 481 attccatttatctcccccagcaaccttgtaagtatataagctctcagtgtactccagaat 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 att-catttatctcccccagcaaccttgtaagtatataagctctcagtgtactccagaat 243
Query: 541 gtggagggagtgggtagctaaagtttatgttcaactaaaacc 582
||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 242 gtggagggaatgggtagctaaagtttatgttcaactaaaacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 980
Length adjustment: 10
Effective length of query: 572
Effective length of database: 970
Effective search space: 554840
Effective search space used: 554840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no050_h01.g1 MSMg01no050_h01.g1 CHROMAT_FILE:
MSMg01no050_h01.g1 PHD_FILE: MSMg01no050_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:45 2005
(583 letters)
>mm_chr1_178782947_178783927
Length = 981
Score = 1038 bits (537), Expect = 0.0
Identities = 571/583 (97%), Gaps = 2/583 (0%)
Strand = Plus / Plus
Query: 1 tattctgcttactcaacaagcagcccagcctagtggacatctgaggcttattaagggagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattctgcttactcaacaagcagcccagcctagtggacatctgaggcttattaagggagg 260
Query: 61 ggcggagcttgcccaggatccagaccagtagccaagattttgttcaattagagtgtcagc 120
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtggagcttgcccaggattcagaccagtagccaagattttgttcaattagagtgtcagc 320
Query: 121 tcctaaaagatacaactggagggcttgaggggtcccataaaaatacccactgaaataaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctaaaagatacaactggagggcttgaggggtcccataaaaatacccactgaaataaaa 380
Query: 181 agcagaaataaacagtagacttcataactagctgagagaatttgactgggggtgggggag 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcagaaataaacagcagacttcataactagctgagagaatttgactgggggtgggggag 440
Query: 241 atgaaaatgaggccacagaaggattaaaaggaagtgtgtccaccagtcctagcaagccag 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgaaaatgaggccacggaaggattaaaaggaagtgtgtccaccagtcctagcaagccag 500
Query: 301 agtagacagcacgtcaaggcctttgaacccccacccctgcctgctaacgagtgagaccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtagacagcacgtcaaggcctttgaacccccacccctgcctgctaacgagtgagaccaa 560
Query: 361 ggtttctcttcaaatattccaagtctctcacatagacttcctcattggtaaagctgcctt 420
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 ggtttctcttcaaatattctaagtctttcacatagacttcctcattggtaaagctgcctt 620
Query: 421 tgatgtgcgcaccctcttctgaacttggtcgcctgtcccagctccttcacttcccttttc 480
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 tgatgtgcgcac--tcttctgaacttggttgcctgtcccagctccttcacttcccttttc 678
Query: 481 taagccattccctcttgctgaggcctctctctgtggtcctgcatacgccagccatttcca 540
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 679 taagtcattccctcttgctgaggcctctctctgtggtcctgcatatgccagccatttcca 738
Query: 541 aaaaagggtattgtcccatgcagatgtggccctgcctggaatg 583
||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 739 aaaaagggtattgtcccatgcagatgtggtcctgcctggaatg 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 981
Length adjustment: 10
Effective length of query: 573
Effective length of database: 971
Effective search space: 556383
Effective search space used: 556383
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
