BAC Information

Click to search

BAC

Clone NameMSMg01-050I06
Chromosome1 (Build37)
Map Location 63,812,907 - 63,813,546
singlet/doubletsinglet
Overlap gene4933402D24Rik
Upstream geneNrp2, LOC100043070, A430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215, Mdh1b, Fastkd2
Downstream geneLOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1, LOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050I06.T7 (MSMg01no050_i06.b1)MSMg01-050I06.TJ (MSMg01no050_i06.g1)
ACCAG279575AG279576
length1,1761,208
length of high quality
(start - end)		696 (43 - 738)742 (69 - 810)
definitionCHROMAT_FILE: MSMg01no050_i06.b1 PHD_FILE: MSMg01no050_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:56 2005CHROMAT_FILE: MSMg01no050_i06.g1 PHD_FILE: MSMg01no050_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTACAGTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATTTTCT
GAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTAT
CTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTT
GTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAG
GTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGT
TCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTC
TCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCCA
TTTAGATTTGACCTTACTACAAGGAGATGAGTATGGATCGATTCGCATTC
TTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTG
TCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACC
ATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTA
CTTGTCTCTCTCTATACCAGTACCCTGCAGTTTTTACCACAATTGCTCTG
TAGTAAAGCTTTAGGTCCGGCATGGTGCCTCCACCAGAGGTTCTTTTATC
CTTGAGAAGAGTTCTTGCTATCCTACGTTTTTTGTTATTCCCGACGAATT
TGCAAATTGCCTCTTCTAATTCGTTGAAGAATTGAGTTGGAATTTTGATG
CGGATTGCTTTGAATCTGTAGATTGCTTTTGGCAAGATAGCCATTTTTTA
CATATTGCTCCTGCCCAATCCATGAGCATGGGAAATCTTTCCCCCTTCTG
AAATCTTCTTTAATTTCTTTCTTCCTAGACTTGCAGTTTTTTATCTCCAA
CTTTTTTCCTTTCCTTAATTAAAGTCCCCTCCTAGATATTTTTATTTTCT
TTGGTAACTAATCAATAAGGGTGTTTTTTTCCCTAATTTTCTTTCCTCCC
CCGGTTTATTTTTCTTTTTTAAAACAAATGCTCTTTTTATCATTTTTTAA
TTCTATTTTTTACATTACTTCCTATCTATTCCTCTCAAACTTCTTTTTCT
CTATGNCTTATCTATTTATCTTCTTT

NNNNCCCACAGGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCTCTGGAAGTGTTTGTGAGAGTAATATTCC
ATCTCCAAAACAACTGCATGTTACTAACACAAGCAGGAAGGATTACTGTA
GCTCTTGAAGAAGAATTTTTACTCTGCAGGAAGGATACAATGAAAGAAAG
AGCCTGTGAGCTACACGACCCCCAAGCAGCCTGTGGGAGAAAAAGAATGC
CTTGGGCCAACCAACTTTGCCCCTATTCAGGATAAACTATCTCCTACTTC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACACACACATTGAAGGGTAGACCACACACCTCCTGTGC
TCTGCCAGCAACTTTCAGAAATGAGGGTCAATTCCATCCCTGCTACTTGT
ACTTCAAGACCTCATCCTTCACACTGTTATCACCATAACCCTATCATTAC
GCTGCTTGTTAGTCATGATTAAAACAATAAACAAAGGGAAAACTCTTTCC
CTGGTGAGCATGAATAATTGCAGATGAGCACATCTTGTTTGGGCCCCACA
CCGTGTAATGTTATATGCTATTACCAACAGTATTAGAGGATGTTTTATTG
CCTGATACCATTTCTTTCTAATTGTACTATCTGCTCCCTTCAGATTCCAA
TCTCATCCTGAAGGCCCAACAAAGTAACCCAGAGGGAGTTTATAGCTCTT
GCCTGCAATTTATGGAAAAAGTCTTTCTCCTTGGTGATTTAACCCTGAAG
CAAAAATGTGAAACCAAGCAGAAAGAGGCAGGGCATGCTTTGACTACCCA
GACATTAAAAGGAAGAGCATATGGGAAATGAGCCTTGCTGCTGGCGTAAC
TAGCAAGGAGAAATCTAGGGGATCCTGTGCCCTACCCCAGCAAGCTCCAC
CTAAAAAACCAGTTTCCTCCATGGGCTGGGCTCCATCCCGAAGCTTGCAA
CCAGCTAGGAATTCCTTTCGGTCCCCTCCCCCCGGGCCCCGGCAAGCTCT
TTTCCTCCGCCCAAAAAGAATGCCTTTCTGGGCAATATTGACAAAAAGGA
GTTTTTATTCCCCCTCCCCAAAGTTTAAAAAAAAACCCTTATTTTCGGGG
GAATCTTTATACCAATGGGATCCCGCGGGGAAAACATACTCTCCCAAAAG
ATTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_i06.g1 MSMg01no050_i06.g1 CHROMAT_FILE:
MSMg01no050_i06.g1 PHD_FILE: MSMg01no050_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:56 2005
         (742 letters)



>mm_chr1_63812404_63813546
          Length = 1143

 Score = 1152 bits (596), Expect = 0.0
 Identities = 635/662 (95%), Gaps = 23/662 (3%)
 Strand = Plus / Minus

                                                                        
Query: 82   agctcttgaagaagaatttttactctgcaggaaggatacaatgaaagaaagagcctgtga 141
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1143 agctcttgaagaagaatttttactctgcaggaaggatacaatgaaagaaagagcctgtga 1084

                                                                        
Query: 142  gctacacgacccccaagcagcctgtgggagaaaaagaatgccttgggccaaccaactttg 201
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1083 gctacacgacccccaagcagcctgtgggagaaaaagaatgccttgggccaaccaactttg 1024

                                                                        
Query: 202  cccctattcaggataaactatctcctacttcacacacacacacacacacacacacacaca 261
            ||||||||||||||||||||||||||||||                      | ||||||
Sbjct: 1023 cccctattcaggataaactatctcctactt----------------------ctcacaca 986

                                                                        
Query: 262  cacacacacacacacacacacacacacacacacacacacacattgaagggtagaccacac 321
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985  cacacacacacacacacacacacacacacacacacacacacattgaagggtagaccacac 926

                                                                        
Query: 322  acctcctgtgctctgccagcaactttcagaaatgagggtcaattccatccctgctacttg 381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925  acctcctgtgctctgccagcaactttcagaaatgagggtcaattccatccctgctacttg 866

                                                                        
Query: 382  tacttcaagacctcatccttcacactgttatcaccataaccctatcattacgctgcttgt 441
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865  tacttcaagacctcatccttcacactgttatcaccataaccctatcattacgctgcttgt 806

                                                                        
Query: 442  tagtcatgattaaaacaataaacaaagggaaaactctttccctggtgagcatgaataatt 501
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 805  tagtcatgattaaaacaataaacaaagggaaaagtctttccctggtgagcatgaataatt 746

                                                                        
Query: 502  gcagatgagcacatcttgtttgggccccacaccgtgtaatgttatatgctattaccaaca 561
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745  gcagatgagcacatcttgtttgggccccacaccgtgtaatgttatatgctattaccaaca 686

                                                                        
Query: 562  gtattagaggatgttttattgcctgataccatttctttctaattgtactatctgctccct 621
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 685  gtattagaggatgttttattgcctgatacaatttctttctaattgtactatctgctccct 626

                                                                        
Query: 622  tcagattccaatctcatcctgaaggcccaacaaagtaacccagagggagtttatagctct 681
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625  tcagattccaatctcatcctgaaggcccaacaaagtaacccagagggagtttatagctct 566

                                                                        
Query: 682  tgcctgcaatttatggaaaaagtctttctccttggtgatttaaccctgaagcaaaaa-tg 740
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 565  tgcctgcaatttatggaaaaagtctttctccttggtgatataaccctgaagcaaaaaatg 506

              
Query: 741  tg 742
            ||
Sbjct: 505  tg 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 93
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 742
Length of database: 1143
Length adjustment: 10
Effective length of query: 732
Effective length of database: 1133
Effective search space:   829356
Effective search space used:   829356
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


| Home | SequenceCutter | Blast | Download |