BAC Information

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BAC

Clone NameMSMg01-050O05
Chromosome1 (Build37)
Map Location 90,179,374 - 90,180,000
singlet/doubletsinglet
Overlap genenone
Upstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822
Downstream geneTrpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050O05.T7 (MSMg01no050_o05.b1)MSMg01-050O05.TJ (MSMg01no050_o05.g1)
ACCAG279827AG279828
length1,1591,170
length of high quality
(start - end)
666 (81 - 746)630 (71 - 700)
definitionCHROMAT_FILE: MSMg01no050_o05.b1 PHD_FILE: MSMg01no050_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:47 2005CHROMAT_FILE: MSMg01no050_o05.g1 PHD_FILE: MSMg01no050_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTTTACATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGA
ATTCTATACTGAGGAAATTCCCTGTTATGAGAAACTCCTAAAGAAATGTT
CAACATTCTTAGGCCTATGCACATCAAATCAACCCTGGTATTCCACCTCA
CACCAGTCAGAATGGCTAAGATAAAAAACTAAGCTGACAGCAGATGCTGG
TGAGGATGTGGAGAAAGGTGTGGGATTGCAATCTGGTACAACCACTCTGG
AAATCAGTTTTGTGGTTCCTCAGAAAATTGGAAATTCTACTACCTGAGGA
TCCAGCTATACCACTCCTGGGCATGTATCCAGAAGATGCTCCAACAAGTA
ATGAGGACACATGCTCCTCTGTGTTCATAGCAGCTATATTTATTATATCT
AGAAGCTGCAAGTAACACAGATGTCCTTCAACAGAGGACTGGATACAGAT
AAAGGGGTACCACTTAGCTATTAAAAACACTGACTACTTGAAATTTGTGG
ACAAATGGATGGATCTAGAAAATATCATCCTGAGTGAGGTAACTCAGTCA
CAAAAGAACACACATGATATGTACTCACTGTTAAGTGGATACTAGGCAAA
TGGCATGAACTTTCCATGATTCAACTCATATACCACATGAAGCTGAATTG
GAAAGAACACCAAAGGGAGTATGCTTTAGTACCTCTTAGACTTTGACAAA
TGCTTTAATTCAAGAATAATCTCACAAGTGCCAAGAGTTTTGATGGCCAA
AATTGCACACGTCCATGCAGGAGCCATGACCAATGGCTTTAGAACACATG
GAAGATGGTCCACTGGTTAGCCAGCACAACCACTATGGGTGCCCCTTGNT
TAAGAACCCATGGATTGTGTCCTGGAAGATGTCCTGCTGTTGGTTATCTG
TTTCTACCCCCGCATGCTGTAACCCACTTCCCTTCCTAATCTTAGAAAAT
ATAGGAAATTAACAAAATGGGCCTTGCCCACTCCTCCACCATTTAAAAAT
CTTGTGGCCCTTCCCCATTAATTAATTACCTTTTTTGGTATCCAAGGAAA
ACTTTCCCTTGAATTGAAACAAACCTTCTTCGTGTGGAACTGGGAAGGGT
ATTTCTACCCCCCTGGAAACAAGAGCTTTGGTTGGGTCCCCCCAAAAAAT
TGTGGGGGA
TTTTTTAACAAGTGAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTCTATGCTCCCTTCCTTTCTTTGTGTAGG
TTAGATCATCTACTACTTTCTGCTTCCTGCTTTATGCTTCTGCAGCATCC
ACTCCTAGATCTGTTTACAGGCTTACATTTACAAGGTTTGACTTTCACGT
TTGGCACTGACTTTATTCACGATTGCTTTAATGCTTCATTGTTATCCGAC
TTATGGAACTACCTGCTTGGTTACTCTCTGTGCGCTGAATCGCAATGTGA
GAGTTTTAGACTAGGTTTGCTCTCCCAACCTACTGCATTGTGCAGCAAGT
TTAAGCAGGATTCTGGTCATTATGCCTGGGCTCAAGGTCCCCAACCTCTT
TCATATGGACTTTTGAAGAACATTCCAGATGCAAACCATGGCGTCCATTC
TGAGCAACCCTCAGAGTTATCAGTGAGTCTCATGATGCTCTTATTACATG
TTTTGTCTTGCATAATATGATGGGATTGACTGGTGGCTCCAAAGGCAATC
TACTTCCATTTAGTAATAACAGTAACGTGCCCACTGAGCAGAATATGCTA
AGGGCTTTGGATCTATTGATCTTTTCATTGTCCCACTAAAGGAGGGAGGG
ACTTGTGTTGAGATTCCAATTCCGCAATCTGTAACCCAGGCTACTCTGGG
CAATGTGTCTGAGTCTCAGTGATGCCATTCATAAAATGGGGATCCTCTTG
CCTTTGCAGAGTGATGGAGATCGCACCATTGAGACAGTGCTTGTTACCAG
CAAGCTGGTTCCCTAAGAATGTTGCCTCCCCTACCTCTGCCGGCATGGGG
GCTTGAAAACAGGCCACCAGTCCAAAAGCTGATTCTCACCCCACCCTGCA
ACGAATTGTCCGTGGTATGGAACAGGAAAGCCATGTGTTCAAGCCCGTTT
TGCAAGGTAAGGAAAAAAAGGGGGTCCGGTAAGGTCACCTTTTAAAACCT
TTCCCATCCGAAAAAGGAGTTTCTTTTTCGGAAGTTCCCAAAAAAAACCT
TCCTAACTTTTATTTTCTCCAAAAGGTCACTCCCTTGGGGTTCTTAACCT
TTTTCCAGATTTTTCCCAAAAACACGTCCATAATGGTGGCTAAACCCCAA
AAGTGCTTTTACTTTAAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_o05.g1 MSMg01no050_o05.g1 CHROMAT_FILE:
MSMg01no050_o05.g1 PHD_FILE: MSMg01no050_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:48 2005
         (630 letters)



>mm_chr1_90179170_90180200
          Length = 1031

 Score = 1073 bits (555), Expect = 0.0
 Identities = 609/627 (97%), Gaps = 1/627 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   atgctcccttcctttctttgtgtaggttagatcatctactactttctgcttcctgcttta 64
           ||||||||| |||||| |||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 205 atgctccctccctttcattgtataggttagatcatctagtactttctgcttcctgcttta 264

                                                                       
Query: 65  tgcttctgcagcatccactcctagatctgtttacaggcttacatttacaaggtttgactt 124
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 265 tgcttctgcagcatccactcctagatctgtttacaggcttacgtttacaaggtttgactt 324

                                                                       
Query: 125 tcacgtttggcactgactttattcacgattgctttaatgcttcattgttatccgacttat 184
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcacgtttggcgctgactttattcacgattgctttaatgcttcattgttatccgacttat 384

                                                                       
Query: 185 ggaactacctgcttggttactctctgtgcgctgaatcgcaatgtgagagttttagactag 244
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 385 ggaactacctgcttggttactctctgtgtgctgaatcgcaatgtgagagttttagactag 444

                                                                       
Query: 245 gtttgctctcccaacctactgcattgtgcagcaagtttaagcaggattctggtcattatg 304
           ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 445 gtttgctctcccaacctacagcattgtgcagcaagtttaagtaggattctggtcattatg 504

                                                                       
Query: 305 cctgggctcaaggtccccaacctctttcatatggacttttgaagaacattccagatgcaa 364
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctgggctcaaggtccccaacccctttcatatggacttttgaagaacattccagatgcaa 564

                                                                       
Query: 365 accatggcgtccattctgagcaaccctcagagttatcagtgagtctcatgatgctcttat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 accatggcgtccattctgagcaaccctcagagttatcagtgagtctcatgatgctcttat 624

                                                                       
Query: 425 tacatgttttgtcttgcataatatgatgggattgactggtggctccaaaggcaatctact 484
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 625 tacatgttttgtcttggataatatgatgggattgactggtggctccaaaggcaatttact 684

                                                                       
Query: 485 tccatttagtaataacagtaacgtgcccactgagcagaatatgctaagggctttggatct 544
           |||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct: 685 tccatttagtaataacagtaacatgcccactgagtagaatgtgctaagggctttggatct 744

                                                                       
Query: 545 attgatcttttcattgtcccactaaaggagggagg-gacttgtgttgagattccaattcc 603
           |||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 745 attgatcttttcattgtctcactaaaggagggaggtgacttgtgttgagatcccaattcc 804

                                      
Query: 604 gcaatctgtaacccaggctactctggg 630
           |||||||||||||||||||||||||||
Sbjct: 805 gcaatctgtaacccaggctactctggg 831


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1031
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1021
Effective search space:   633020
Effective search space used:   633020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)