BAC Information

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BAC

Clone NameMSMg01-050P02
Chromosome1 (Build37)
Map Location 71,229,049 - 71,248,795
singlet/doubletdoublet
Overlap genenone
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900
Downstream geneAbca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050P02.T7 (MSMg01no050_p02.b1)MSMg01-050P02.TJ (MSMg01no050_p02.g1)
ACCAG279866AG279867
length1,1241,134
length of high quality
(start - end)		796 (32 - 827)738 (74 - 811)
definitionCHROMAT_FILE: MSMg01no050_p02.b1 PHD_FILE: MSMg01no050_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:55 2005CHROMAT_FILE: MSMg01no050_p02.g1 PHD_FILE: MSMg01no050_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,229,049 - 71,229,830)(71,248,167 - 71,248,795)
sequence
NNGGCGTCATTGGGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAAT
TCCATGCTGTTCTCTGTTGTCATGATCAAAGAATACAGGGAGTTACATTG
TATTTCATATTCTTTTTTATTACTGCTTTGATTTTCATTGTAATACAAAT
TCCTCTAGGGTGGATAATCATTATCAATTTTATCTAGGAAAATAAATGTT
TTTCACATTTTGAGGGGAGAGAGCACAGATGGCTGAGTTTATACTGAAAT
GGGACAGGGCAGAAAATGAAGCAGAGTTACAGAGAAGATAAAAGGAGCGC
CAGTGTTTCCATTCTACCCTGAGTCGCCCCTAATTGGTTCTACCTATTTC
TTTATGTTGTTGCCATCATCTCTTCTCATTGTTTATGGACACTGCAAACC
CTGAAACATCCATATTGTCACTGTTATATCCTCGGGATGTTGGTTCCATT
GTGCTAAAGCAAGTTGCTTTTTGATGTCATCATTTGCCTGAAGTGAAGGA
GCATATGACTCATGGTCACAGCACATGACAGACACTCTTAGTAGAAGGAT
TTTGTGATGCTGCTGGATGCTGGATTAGGAAGTAATACTACAGTGCTGTA
TTCTGCCCACACCTGTGGTCAGAATCCCATGCGTGGGTTGCATTATTCAC
CCTCCTCTGCCTAGCATGCAGACCCTGTGCAGTCTTTTTTATGCACAAGA
AAGTAAATGAGCCAAATAGCCAGCAGTAAAACTCAGAGTCAGCCCATAGC
ACCCTACATTGACTCTAATGCTGCCCCTTCCCCCACGTTGACCCTTTTCC
TCTCCTCCGAAGAGTTTCTCTCTCTCCAAACCTTCTATCACTGTTCCTTT
TCTTTGTCTTATTTTTCTGCCTCACTTTGATGTAGTCATTCAGAACTAAA
TAGAGTGCCCACCCTCTGAACTAATCTATAGTATATTGCTGTGACCTGAA
TCCTATTTTTCTCAGTACCAATAAATTGAATTTTCATTTCTTACAGCCTT
CCTGAACATAACCTCCGGGTCTGGTTTCAAACTAAAATCCTTTGCCAGGA
TCCCCAAAAAATACAAACCCGGGATTTTTAACCCCCGGGTTTCCCTTTTC
CCGGGTAAATTTCAAAAAGGCCCT

CCCCCNNTTATCAATGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCTCAGGTACTCTAGTGAAATAGAAA
AACTCATTGGAAAATCACTTGGAAATGTACTTGAAAGTTAGACATTAACC
TAAATATGTTTCACCCATTTCACTTTTAGCTAACTGTCCAAGAAAACAGA
AGCACACCTACAAAGCCTCGGGTACAGATGTGCACAGAACATACTTAAAA
TAGTCCCCAAACTGCAGACAACCAGGACTAACTCTTCCACAGCCTTCAAA
TGGACTCAAGAAATTGGGGCATATCTGTATAATGGAATCCTACACGGTAT
TAGCAAGAATTGAACTCTTCATATATGTAGCATCTGTGAATCTCAGGAGC
ATGTGGCAACCGAGAGAAAGCCAGTCTAAAACACTATAGAACCTGTGTGT
CTGCTGGACTGTGCACATACAGCATTCATGAAGAACTGTAGGTAATTCAC
AGCATGCTGGAGTTCAACATGACTCAGAGCACACGCATAGTATGTAGTTG
CTGTATGTGGGGCTGCCGTCAATGGCTAGGGATTTTCTCAAAACCAGAGA
TGCTTCAAAAGAAAAGTGGCCCCTGATGTCTTAAGATAATAAGGCCCAGG
GAGCTTAGTATTATCCTTTTCACTTACGTTATGTCTACAGATTATGTCGA
AGCATTGCAGACAGAGTGGGGCAGGAGACTAGCCCAGTTGCTATAGTGTT
TGTAGTTTGTGTGCATACCAAGAAGTGAAATACGAGCTGACTTGGTTTTA
TGCAGCATCCATGCAAGAACAGGTCATAAAGTACATAACACATAATTTTG
GCTATTCTGCAAATTAAAATTTACACTTAAAGCTGCTATTTAACAATATA
AAAATGGACTGTAACTTTTGCCCTAATAATTAAAAGAAATTTAATGTTCC
CCATTTAAAACATTTAATGGCAAGTGAAAATACTGAGCTACCTTGAAAGG
AATTTCCCGAAAAAAAACCCCTTTTTACTTTATTTACCCCAAATAAGCAT
TTTTCCCAATACCTTTCTGGAACAGGAGGGGGAACATAATTTTTTACTTT
TGTCCATGACACGCGGAAAATAGGCCCCAACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_p02.b1 MSMg01no050_p02.b1 CHROMAT_FILE:
MSMg01no050_p02.b1 PHD_FILE: MSMg01no050_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:55 2005
         (796 letters)



>mm_chr1_71228835_71230030
          Length = 1196

 Score = 1458 bits (754), Expect = 0.0
 Identities = 775/782 (99%)
 Strand = Plus / Plus

                                                                       
Query: 15  ggaattccatgctgttctctgttgtcatgatcaaagaatacagggagttacattgtattt 74
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 215 ggaattccatgctgttctctgttgtcatgatcaaagaatacagggagatacattgtattt 274

                                                                       
Query: 75  catattcttttttattactgctttgattttcattgtaatacaaattcctctagggtggat 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 catattcttttttattactgctttgattttcattgtaatacaaattcctctagggtggat 334

                                                                       
Query: 135 aatcattatcaattttatctaggaaaataaatgtttttcacattttgaggggagagagca 194
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 335 aatcattatcaattttatctaggaaaataaaagtttttcacattttgaggggagagagca 394

                                                                       
Query: 195 cagatggctgagtttatactgaaatgggacagggcagaaaatgaagcagagttacagaga 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cagatggctgagtttatactgaaatgggacagggcagaaaatgaagcagagttacagaga 454

                                                                       
Query: 255 agataaaaggagcgccagtgtttccattctaccctgagtcgcccctaattggttctacct 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 agataaaaggagcgccagtgtttccattctaccctgagtcgcccctaattggttctacct 514

                                                                       
Query: 315 atttctttatgttgttgccatcatctcttctcattgtttatggacactgcaaaccctgaa 374
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gtttctttatgttgttgccatcatctcttctcattgtttatggacactgcaaaccctgaa 574

                                                                       
Query: 375 acatccatattgtcactgttatatcctcgggatgttggttccattgtgctaaagcaagtt 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 acatccatattgtcactgttatatcctcgggatgttggttccattgtgctaaagcaagtt 634

                                                                       
Query: 435 gctttttgatgtcatcatttgcctgaagtgaaggagcatatgactcatggtcacagcaca 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gctttttgatgtcatcatttgcctgaagtgaaggagcatatgactcatggtcacagcaca 694

                                                                       
Query: 495 tgacagacactcttagtagaaggattttgtgatgctgctggatgctggattaggaagtaa 554
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tgacagacactcttagtagaaggattttgtgatgctgctggatgctggattaggaagtaa 754

                                                                       
Query: 555 tactacagtgctgtattctgcccacacctgtggtcagaatcccatgcgtgggttgcatta 614
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 755 tactacagtgctgtattctgcccacacctgtggtcagaatcccatgtgtgggttgcatta 814

                                                                       
Query: 615 ttcaccctcctctgcctagcatgcagaccctgtgcagtcttttttatgcacaagaaagta 674
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ttcaccctcctctgcctagcatgcagaccctgtgcagtcttttttatgcacaagaaagta 874

                                                                       
Query: 675 aatgagccaaatagccagcagtaaaactcagagtcagcccatagcaccctacattgactc 734
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 875 aatgagccaaatagccagcagtaaaactcagagtcagcccatagcaccctacgttgactc 934

                                                                       
Query: 735 taatgctgccccttcccccacgttgacccttttcctctcctccgaagagtttctctctct 794
           |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 935 taatgctgcctcttcccccacgttgacccttttcccctcctccgaagagtttctctctct 994

             
Query: 795 cc 796
           ||
Sbjct: 995 cc 996


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 796
Length of database: 1196
Length adjustment: 10
Effective length of query: 786
Effective length of database: 1186
Effective search space:   932196
Effective search space used:   932196
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no050_p02.g1 MSMg01no050_p02.g1 CHROMAT_FILE:
MSMg01no050_p02.g1 PHD_FILE: MSMg01no050_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:55 2005
         (738 letters)



>mm_chr1_71247658_71248795
          Length = 1138

 Score = 1185 bits (613), Expect = 0.0
 Identities = 625/629 (99%)
 Strand = Plus / Minus

                                                                        
Query: 110  actgtccaagaaaacagaagcacacctacaaagcctcgggtacagatgtgcacagaacat 169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1138 actgtccaagaaaacagaagcacacctacaaagcctcgggtacagatgtgcacagaacat 1079

                                                                        
Query: 170  acttaaaatagtccccaaactgcagacaaccaggactaactcttccacagccttcaaatg 229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1078 acttaaaatagtccccaaactgcagacaaccaggactaactcttccacagccttcaaatg 1019

                                                                        
Query: 230  gactcaagaaattggggcatatctgtataatggaatcctacacggtattagcaagaattg 289
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 gactcaagaaattgcggcatatctgtataatggaatcctacacggtattagcaagaattg 959

                                                                        
Query: 290  aactcttcatatatgtagcatctgtgaatctcaggagcatgtggcaaccgagagaaagcc 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958  aactcttcatatatgtagcatctgtgaatctcaggagcatgtggcaaccgagagaaagcc 899

                                                                        
Query: 350  agtctaaaacactatagaacctgtgtgtctgctggactgtgcacatacagcattcatgaa 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898  agtctaaaacactatagaacctgtgtgtctgctggactgtgcacatacagcattcatgaa 839

                                                                        
Query: 410  gaactgtaggtaattcacagcatgctggagttcaacatgactcagagcacacgcatagta 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838  gaactgtaggtaattcacagcatgctggagttcaacatgactcagagcacacgcatagta 779

                                                                        
Query: 470  tgtagttgctgtatgtggggctgccgtcaatggctagggattttctcaaaaccagagatg 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778  tgtagttgctgtatgtggggctgccgtcaatggctagggattttctcaaaaccagagatg 719

                                                                        
Query: 530  cttcaaaagaaaagtggcccctgatgtcttaagataataaggcccagggagcttagtatt 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718  cttcaaaagaaaagtggcccctgatgtcttaagataataaggcccagggagcttagtatt 659

                                                                        
Query: 590  atccttttcacttacgttatgtctacagattatgtcgaagcattgcagacagagtggggc 649
            ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 658  atccttttcacttacgttatgtctacagattatgttgaagcattgcagagagagtggggc 599

                                                                        
Query: 650  aggagactagcccagttgctatagtgtttgtagtttgtgtgcataccaagaagtgaaata 709
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598  aggagactagtccagttgctatagtgtttgtagtttgtgtgcataccaagaagtgaaata 539

                                         
Query: 710  cgagctgacttggttttatgcagcatcca 738
            |||||||||||||||||||||||||||||
Sbjct: 538  cgagctgacttggttttatgcagcatcca 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 738
Length of database: 1138
Length adjustment: 10
Effective length of query: 728
Effective length of database: 1128
Effective search space:   821184
Effective search space used:   821184
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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