BAC Information

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BAC

Clone NameMSMg01-051L12
Chromosome1 (Build37)
Map Location 96,791,920 - 96,792,111
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025, LOC100040685
Downstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051L12.T7 (MSMg01no051_l12.b1)MSMg01-051L12.TJ (MSMg01no051_l12.g1)
ACCAG280396AG280397
length1,275816
length of high quality
(start - end)
193 (134 - 326)94 (133 - 226)
definitionCHROMAT_FILE: MSMg01no051_l12.b1 PHD_FILE: MSMg01no051_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:48 2005CHROMAT_FILE: MSMg01no051_l12.g1 PHD_FILE: MSMg01no051_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCGGCCATTTGGGGCTATAGACTACTAAGGGAGAGGATCCGCGGAA
TTCTTTGTTTAGNTCTGACTCTTAAAATTCCCCGGGGNNANNNCANTNCC
GGGAGNCCACCTTAAAAACCTCTTTATACCCCTTGGATATTAGTCCCCTA
TCTATATGTTACTTTGATCATGAGGACTGCATAGTAAGTAGACACTGTCT
AATGACAATTTTTTTTTCTCAGTCCCCTTCTCTTTTTAGCTGTGAACTGT
GGATTTCCTTGATCTCTGTCTACTACTTTCAGGCTTATAAGTACTTCCAT
CCTTCAAATTGTTCAAATATGTTTATTTTGCTGATGTTTTTGCTGTTAGA
GTAAGAAAAAATTCCTAGTCAAGAAAGATGGAGTCCCTAGCCTGTTTTTT
TTTTGCCCAGGACACCCACATGACCCTTTCAGAAGGGCAACCCCCACTTT
TTTTTTTTCCCCCCCCAAAACAATGTCTTCCTTCTAAAAAAAAAAAAGAG
TCTTCTTCTTTCTTAATCTCTGTCTCTATTTCTTTATTTTTTTTTTGTCT
CATAGTCTTTTATTATTTTTATTTTTAGTTCTTTTTTTTCTCTTTTTTTT
TACTTTTTACTTTTTTCCTATTTCTCTTTTCTCTACTTTTTTTTTTCCTT
TTTTTCTTTTGTTTTTTCTCTCTCCTTTTTTTCTTTTTCTTCTTTTATTC
TCTTTTTTCTCTCTTCTTTCTCTTTTTATTTCTTCTTTTTACCTTATGTT
TTATTTTTTTTTTTTTTCATTTTCTTTCTCTTCTTCTTTCTTCTTCTTAT
TCTTTCTTTTTCTCTCTTCTTTTTTTTTTTTTTTTTTTAATCTATTTCTT
TTACTTTTCCTTTTTCTTATCTTTTCTTCTTCTTCTTTTCTTCTTTTCTC
TTCTTCCTCTCTCTTTTCCCTTTTTATCTTTTTTTTTTTTTTCTTTCACC
CCCAATCCTTTCTCTTTTTTCTATCTTCTTTTTTTTTTATTTTATTTTTT
TATTCTCTTCTTCTTTTTTTTTTTATTTTTCTTTTATTTTCTCTTTTCTT
CTTTTTTTTCTCTACTCTTTTTTTCTCCTTCTTTCTTCTTTTATCTTTTC
TCTTTCTCTCTTTTTTCTTTTTCTTCTTTTTCTTATTCTCATTATCTTCA
TTATTCTCCTTAACTCTCCTTTTTTTACCCCTTTTTTTTCCTTTTTTTTT
CTTTTTTTTTTTTCCCTTTTTTTTCTTATTTTTTATTTTTTTTTTTTCTT
CTCTTTCTTTTTTTTTTTTTTTCTT
GGGGGGGTGGGGNNNTTTTTTTTTTTTTTTGTTTTTTTTGNGTTTTTTTA
ATTTTTNNCCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTGACAAATGGAGATT
CTCCACAGATACTTAATAGAACAGCTAAGCTACACTCATACAAGAATTTA
TCAGGGCCCAGGAAATAGGGGGGTTGTGGTATTGCATTATTCATGATAAG
GTCTGCTACAGCATAACCTCCTGGTGCTAGCTTCCACAAGGCTCAAGGGA
GTATTTCATATTGTGATTATTGGTGTGTTTTCCTTGCCTATCATTATTTT
GATCCCCCCAAAACAATGATAATATTTTTTCTGCCCTCACCTACCTGCAA
TCCTACAAACTTAACCTGTATTTCCTCTCTTTAGATTCTATCCCATTTTC
CCCTCCTCTGTAATTTCCGCGTAATTGTTCACCCCCCCCTTTTCCAGCTA
TTTCTTATTATTTATTTTAATTGACATCCTAGATCACTTTATTTATACTC
TATGCTCCATTCCCCACCCCCCTCCCCTCCTTATTGTTTTTTCATTGGTA
GTCAATTCTTTCATTTTTTGTCCCATTCTTGCCACTAATATATTATCCAT
TCTCTTTATGATTAATTATAAATTCATTTCTATAAAAATATTTACTTAAA
AAAAAATTTTAGGTTTAGTTTCTCCGCTTCTCCTCTCCCTTACTCTTTTT
CTTTCTCTGGTATTCTCTTTTGTCACGTGTTTTATTTTTATTTTGCCTTG
TTTGTCTATTTTATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_l12.b1 MSMg01no051_l12.b1 CHROMAT_FILE:
MSMg01no051_l12.b1 PHD_FILE: MSMg01no051_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:51:48 2005
         (193 letters)



>mm_chr1_96791720_96792312
          Length = 593

 Score =  340 bits (176), Expect = 2e-98
 Identities = 188/192 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggatattagtcccctatctatatgttactttgatcatgaggactgcatagtaagtagac 60
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 201 tggatattagtcccctatctatatgttactttgatcatgaggactgcaaaataagtagac 260

                                                                       
Query: 61  actgtctaatgacaatttttttttctcagtccccttctctttttagctgtgaactgtgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgtctaatgacaatttttttttctcagtccccttctctttttagctgtgaactgtgga 320

                                                                       
Query: 121 tttccttgatctctgtctactactttcaggcttataagtacttccatccttcaaattgtt 180
           |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 321 tttccttgatctctgtctactactttcaggcttataagtagtttcatccttcaaattgtt 380

                       
Query: 181 caaatatgttta 192
           ||||||||||||
Sbjct: 381 caaatatgttta 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)