BAC Information

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BAC

Clone NameMSMg01-052D16
Chromosome1 (Build37)
Map Location 196,091,094 - 196,237,947
singlet/doubletdoublet
Overlap genenone
Upstream geneG0s2, Lamb3, Camk1g, LOC667208
Downstream geneEG623172, Plxna2, Cd34, Cd46, Crry, Cr2, EG635956, LOC623380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052D16.T7 (MSMg01no052_d16.b1)MSMg01-052D16.TJ (MSMg01no052_d16.g1)
ACCAG280772AG280773
length705689
length of high quality
(start - end)
290 (69 - 358)290 (76 - 365)
definitionCHROMAT_FILE: MSMg01no052_d16.b1 PHD_FILE: MSMg01no052_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:47 2005CHROMAT_FILE: MSMg01no052_d16.g1 PHD_FILE: MSMg01no052_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(196,091,094 - 196,091,383)(196,237,657 - 196,237,947)
sequence
AAATTTGCGGCGCTAAACGACTCCTATATGCAGACCACCGCGGAATTCTG
GGTTCTTTCCATCATGTTCAGGTGACAGGAATTGGTTTGGGAGGAAGGTT
TCTGATTCAGAATCCTGAAGAAACAGGAGTGGTTTGCCCAAATAATAGAA
GTCTACCAACTACCTTCCAAAATACTTGGCAGAGCTGAGCCAGTGCATGG
CTCATGCTTGAGGCTACTGTTGGTTTAGTTGTGGGTTTACTTCGGTATTT
AAAACAAGCATAACATGAATTACTTGGTGTTCGGGTATGTTCTATATAAA
ACAAAAACAAAATATTATCATAAAACAGTACTGGCTCACAAACCCAGAAT
GTTATAAAAACCAGACCGCACGCCTAATAAGAACTGAATTGAAGTGAATG
AGCAACACTCCTTGAGATCCATGAAGATCCATCTCTATGGAACTTGAGAG
ACCAACAATTTGAGAGAGAGAGAGAGAGAGGCACAGTCAGATGTTACATT
TATTCCTTTCCCTTCTTTCTCCTTTTTCCCCTCTACATATTTTTTTTTAT
TCCTTCTTTCCCTTGTCTTTCTTCCCCCTTTTTTCTTCCTCCCCCCCATT
TACCCCTTTTTTTTCTTTTTCCACTTCCTCCCCCTCCCCCCCGCAATTCT
TTCTTTTCCTAACTTTTACTAACTTATCTTTCTTTTTCCTCCTTCTCCCC
TCTTT
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGCTTCACACCCCTATCTGTCATCTTTGGCA
AGCTGCTGGTGACTGCACCATTGTAGTTTCATAACTGAGTAAATGAACAC
ATAATAGTCACATCTCCAGTGCTTTGTGAGGACAAATGAGAGGATGGTAT
CAAGTGCTCAACACAATGTGTGTCACTTAGTAAACATTGTCTGTGCATTA
GGGATTCTGTTACAAACAGCACTGCTGAGCCCTCCTGAGCTGTGATAGGA
CAATGGCTCTGGTTCTGATTTCTCTACTAGCTTGTCACCTCAACTTAAAC
TCATAACTTTTTAAGGCTAATACCTTAAACAATGTTTTTATTCACTGAGG
GAAATGGAGGCCAACAAAATACAGCAGATTTGAATTCTGATTACAGTGGC
TTTATGATTATTCATGGATCTTTCATAAGTAATATGAATATAGTGCAAAC
TAATTCTTAATTTCAGCAAGGTCTTTGGTGTTCTACCCATATATTAAAGA
TCTATCTTGGTACATTGGAAAGTAACTTTCCTCAGGCTGTAGGTTATTAT
TTAAGTAATAGAAACCCTGAGTGGGAAGAGATCTCAGAACCTCAACGGAT
TTTTATTTTCGCACAAAAATTTATAATTGGTAATTAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_d16.b1 MSMg01no052_d16.b1 CHROMAT_FILE:
MSMg01no052_d16.b1 PHD_FILE: MSMg01no052_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:47 2005
         (290 letters)



>mm_chr1_196090894_196091583
          Length = 690

 Score =  514 bits (266), Expect = e-150
 Identities = 284/290 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtgacaggaattggtttgggaggaaggtttctgattcagaatcctgaagaaacagga 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 caggtgacaggaattggtttgggaggaaggtttctgattcagaaccctgaagaaacagga 260

                                                                       
Query: 61  gtggtttgcccaaataatagaagtctaccaactaccttccaaaatacttggcagagctga 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggttttcccaaataatagaagtctaccaactaccttccaaaatacttggcagagctga 320

                                                                       
Query: 121 gccagtgcatggctcatgcttgaggctactgttggtttagttgtgggtttacttcggtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 gccagtgcatggctcatgcttgaggctactgttggtttagttgtgggtttacttcggtac 380

                                                                       
Query: 181 ttaaaacaagcataacatgaattacttggtgttcgggtatgttctatataaaacaaaaac 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 ttaaaacaagcataacatgaattacttggtgtttgggtatgttctatataaaacaaaaac 440

                                                             
Query: 241 aaaatattatcataaaacagtactggctcacaaacccagaatgttataaa 290
           ||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaatacgatcataaaacagtactggctcacaaacccagaatgttataaa 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no052_d16.g1 MSMg01no052_d16.g1 CHROMAT_FILE:
MSMg01no052_d16.g1 PHD_FILE: MSMg01no052_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:47 2005
         (290 letters)



>mm_chr1_196237294_196237983
          Length = 690

 Score =  532 bits (275), Expect = e-155
 Identities = 287/291 (98%), Gaps = 1/291 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacccctatctgtcatctttggcaagctgctggtgactgcaccattgtagtttcataac 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 654 acacccctatctgtcatctttggcaagctgctggtgactgcagcattgtagtttcataac 595

                                                                       
Query: 61  tgagtaaatgaacacataatagtcacatctccagtgctttgtgaggacaaatgagaggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tgagtaaatgaacacataatagtcacatctccagtgctttgtgaggacaaatgagaggat 535

                                                                       
Query: 121 g-gtatcaagtgctcaacacaatgtgtgtcacttagtaaacattgtctgtgcattaggga 179
           | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 534 gcgtatcaagtgctcaacacaatgtgtgtcacttaataaacattgtctgtgcattaggga 475

                                                                       
Query: 180 ttctgttacaaacagcactgctgagccctcctgagctgtgataggacaatggctctggtt 239
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 474 ttctgttacaaacagcactgctgagccctcctgagctgtgataggacaatagctctggtt 415

                                                              
Query: 240 ctgatttctctactagcttgtcacctcaacttaaactcataactttttaag 290
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ctgatttctctactagcttgtcacctcaacttaaactcataactttttaag 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)