CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAAT
TCCTTCCGCCCACCCCAGCCATCTTTGTTGAGGCTCCACCCACGCTGAGC
TCCACCCCCAGCTGAGCCTCCACCTTCCCACTTAACATTGCTTCTGTGCA
CCCAACAGCCCTTTCTTCCTCTGTTGATTTCAGGCTCACCAGACTCTTCC
ATGTTCTTCTCCATTGTCCTGCTGTGGTACCAGCCATCGCAGGATGTTTT
GTCTCTAAATCCAAAGCCTTTGGAAAAGCAGCACAGCTGTTAGGGACTGC
CGCCATCACTAATTGAGAGGTTTTGTCCACCGTGGGTTAAGCCTTTCATC
TCCTGCATTGTTTCTTCTTTCCATAAGCTACTGATTTCAAACTTTCCTTC
TTTCTTCTACCTTTTAACCACAAACTATAAGATGTCTTCTCAGAGTGTCT
TTTTTTGAGTCTAATATTACCTACTTTCATTTCTTTCTCTTGACTTACAT
GGCATGTGACATGTTTCCTTTTCATTTGTATTTAAACACAAGCAAAACTC
TCCTGTTTAAAATAACATCGTTCTTATTTTGGGCAATGCTCCAGGTCCAT
GTTTTTACCTTTTAGTCGTAAGATGTTTTGAATATTGTACCGCATAATTT
TAAAAAAAGACTTGCTTTTCTCGAGAGCTCTGCCCATGCT

ATGAAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATTCATTAAAGAAACTTTAGTAAAGCTCAAAGC
ACACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTA
TATCAAAGGACAGATTCTGGAAAAAGAAACTAAACAGGGACACAGTGAAA
CTAACAGAAGTTATGAAACAAATGGACTTAACAGATATCTACAGAATATT
TTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCATCGCACGGGACCT
TCTCCAAAACTGACCATATAATTGGTCATAAAACAATCCTCAACAGATAC
AAAAATATTGAAATTGTCCCATGCATCCTATCAGACCACCATGGACAAAG
GCTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCATGTGGA
AACTGAACAACAGTCTTCTCAATAATACCTTGGTCAAGGAAGGAATAAAG
GAAGAAATTAAAGATTTTTTAGAGTTTAATGAAAATGAAACCACAACATA
CCCAAACCCAGGGCTAAAAAGTGGGAATGTGCAGGTAAGGGGGTCGGGCG
GAGGCTATGGGGGACTTTTGGGATATCATTGGAAGTGTAATTGAGGAAAA
TATGTAATAACAAAAAAATTAAATTAAAAAAATTCAT

Query= MSMg01no052_f03.b1 MSMg01no052_f03.b1 CHROMAT_FILE:
MSMg01no052_f03.b1 PHD_FILE: MSMg01no052_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:54 2005
         (574 letters)



>mm_chr1_46477981_46478954
          Length = 974

 Score =  766 bits (396), Expect = 0.0
 Identities = 535/604 (88%), Gaps = 43/604 (7%)
 Strand = Plus / Plus

                                                                       
Query: 10  tccttccgcccaccccagccatctttgttgaggctccacccacgctgagctccaccccca 69
           ||||||| |||||  |||||||||||| |||||||||||| |||||||||||||||||| 
Sbjct: 175 tccttccacccacgtcagccatctttggtgaggctccacctacgctgagctccacccccg 234

                                                                       
Query: 70  gctgagcctccaccttcccacttaacattgcttctgtgcacccaacagccctttcttcct 129
           |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 235 gctgagcctccaccttcccatttaacattgcttctgtgcacccaacaaccctttcttcct 294

                                                                       
Query: 130 ctgttgatttcaggctca--------ccag------------------actcttccatgt 163
            |||||||||||||||||        ||||                  ||||||||||||
Sbjct: 295 ttgttgatttcaggctcagagactctccagctcaccttccctcaccaaactcttccatgt 354

                                                                       
Query: 164 tcttctccattgtcctgctgtggtaccagccatcgcaggatgttttgtctctaaatccaa 223
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 355 tcttctccattgtcctgctgtggtaccagccatcgcgggatgttttgtctctaaatccaa 414

                                                                       
Query: 224 ag---------cctttggaaaagcagcacagctgttagggactgccgccatcactaattg 274
           ||         ||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 415 agcctatgtgccctttgg-aaagcagcacagctgttaggggctgccgccatcactaattg 473

                                                                       
Query: 275 agaggttttgtccaccgtgggttaagcctttcatctcctgcattg--tttcttcttt-cc 331
           |||||| ||||||| | ||||||||| | |||||||||| | |||  ||||  |||| ||
Sbjct: 474 agaggtcttgtccatcttgggttaag-cattcatctcctcctttgattttc--ctttccc 530

                                                                       
Query: 332 ataagctactgatttcaaactttccttctttcttctaccttttaaccacaaactataaga 391
           |||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 531 ataagctacttatttcaaactttccttctttcttctactttttaatcacaaactataaga 590

                                                                       
Query: 392 tgtctt-ctcagagtgtctttttttgagtctaatattacctactttcatttctttctctt 450
           |||||| | |||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 591 tgtcttccccagagtgtctttatttgggtctaatattacctactttcatttctttctctt 650

                                                                       
Query: 451 gacttacatggcatgtgacatgtttccttttcatttgtatttaaacacaagcaaaactct 510
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gacttacatggcatgtgacatgtttccttttcatttgtatttaaacacaagcaaaactct 710

                                                                       
Query: 511 cctgtttaaaataacatcgttcttattttgggcaatgctccaggtccatgtttttacctt 570
           |||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 711 cctgtttaaaataacatcattcttgttttgggcaatgctccaggcccatgtttttacctt 770

               
Query: 571 ttag 574
           ||||
Sbjct: 771 ttag 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)