XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTCT
TTGGGGATCTTTTTTTATGCTCATGCTTTGGTGTAATCACACACACATGT
GCCATGTGTGATGCACACACACACACACACACACACACACACACACACAC
ACACACACACAGTACCTTATAAAACTCTTCAAAGAAGCAATATAAGAGTA
AAACAAAACAAACAAACAAAAAACCCAAAGCAAGCCATACCACCTCCAAT
TTAAAACATCTTGACTGCTTTTTAATATAGAACGTGCTCTTTCCCTTCCT
TAGCTGCACACAGTTGTATTTTTCCATTCGCAGGGCTTGTAATTCTGTAG
CTAACCTTGTTTTTAAAAAAAGTGCCTGGCCAAAATGTGCTTAGCAAGTT
GTTTATTTCTAAACCCTGAGGAATCAAAAGTAGCCTGTTACTTTATTATG
ATGACATTTTAATTATGACTGCACTCATGGCTTTTTTATCCTTTGGATAT
TTGAATCACTTTATGATTCTGAAGGTTAAGTTTGTGAGCTTGGGGGTAAT
TATTTAACTAAAGAATAATACCGACTCTGTTTATATATAAATAAAATTAC
ATGAACTTGTCTTCCAGATTTTCAGAATTGCAATTTAAATTTTTGCTGTG
TCCTGAATTTCATGCATATAATTTTATCTGTTTACTAAATAGCTGTGAGA
CTACCAAAGAAAACTCTGCTCCTN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGGATTCTCTTTAGTTCTTACCACATTTTTGATTGGGTTGTTTG
AAGACGATGACGAAGAAGAAGACGAAGACGACGAAGAAGATGATGATGAC
GATGACGACGACGACGATGAATACTACGACGACGACCATTATCGCTTCCG
ACGTATGATCACGATCGACTCTTCTCATGTTCCCGCTCCTTCCTCTCCCG
CTCCAGCTGCCGCCTGCCTCGCCTTTCCCATCACCTCTCGGCCGCGCCAC
GCTGGCCCCTTCCTGTTTTCTTGTCCTGTTCGCCCCTCCCTCTGCGTTCC
CCTCCCTCCTCCCCTCTCCCCTCCATCCCTGTCTTGCTGTTTTATTCTTT
TCTCCTCCCCCCCCCCCTCTTTCTTCTTCTTTCCTTCTTTCTTCCTTCCT
CTCCTTCCCTCTCTCTTTCCTTTTCTCCCCCCCTCTCTCCCTCCCTTTTT
TCTCTCTCTCGCTCCTTTCCCTTGCTCCCCCTCGTCTTTTTTGTTTACCT
CTTCTTCCCTTCTGTTCCTTTTGTTCCCCCGCGCTCTCCTTCCCCTTTTC
CCTTTTCCTCCTCCTCCCGTACCCCCTTCCTTTCTTTTCTCCCTCTTTTT
CCTTCCCCCTTCTCTTCTTTCTCTCTCTTCCCTTCCTTCGCCTCCTTTTC
TCTCCTCTCCTCCCTTCTTCCTCTCCGCCTCCCCCCTCCTCCCCTTCTTC
TCCCTCCG

Query= MSMg01no052_g09.b1 MSMg01no052_g09.b1 CHROMAT_FILE:
MSMg01no052_g09.b1 PHD_FILE: MSMg01no052_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:00 2005
         (581 letters)



>mm_chr1_17646512_17647492
          Length = 981

 Score = 1048 bits (542), Expect = 0.0
 Identities = 561/576 (97%), Gaps = 14/576 (2%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctttggggatctttttttatgctcatgctttggtgtaatcacacacacatgtgcc 65
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gaattctttggggatttttttttatgctcatgctttggtgtaatcacacacacatgtgcc 279

                                                                       
Query: 66  atgtgtgatgcacacacacacacacacacacacacacacacacacacacacacacacagt 125
           |||||||||||||||||||||||||||||||||||||||||||||              |
Sbjct: 280 atgtgtgatgcacacacacacacacacacacacacacacacacac--------------t 325

                                                                       
Query: 126 accttataaaactcttcaaagaagcaatataagagtaaaacaaaacaaacaaacaaaaaa 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 accttataaaactcttcaaagaagcaatataagagtaaaacaaaacaaacaaacaaaaaa 385

                                                                       
Query: 186 cccaaagcaagccataccacctccaatttaaaacatcttgactgctttttaatatagaac 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cccaaagcaagccataccacctccaatttaaaacatcttgactgctttttaatatagaac 445

                                                                       
Query: 246 gtgctctttcccttccttagctgcacacagttgtatttttccattcgcagggcttgtaat 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gtgctctttcccttccttagctgcacacagttgtatttttccattcgcagggcttgtaat 505

                                                                       
Query: 306 tctgtagctaaccttgtttttaaaaaaagtgcctggccaaaatgtgcttagcaagttgtt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tctgtagctaaccttgtttttaaaaaaagtgcctggccaaaatgtgcttagcaagttgtt 565

                                                                       
Query: 366 tatttctaaaccctgaggaatcaaaagtagcctgttactttattatgatgacattttaat 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tatttctaaaccctgaggaatcaaaagtagcctgttactttattatgatgacattttaat 625

                                                                       
Query: 426 tatgactgcactcatggcttttttatcctttggatatttgaatcactttatgattctgaa 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tatgactgcactcatggcttttttatcctttggatatttgaatcactttatgattctgaa 685

                                                                       
Query: 486 ggttaagtttgtgagcttgggggtaattatttaactaaagaataataccgactctgttta 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ggttaagtttgtgagcttgggggtaattatttaactaaagaataataccgactctgttta 745

                                               
Query: 546 tatataaataaaattacatgaacttgtcttccagat 581
           ||||||||||||||||||||||||||||||||||||
Sbjct: 746 tatataaataaaattacatgaacttgtcttccagat 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)