Query= MSMg01no052_i13.b1 MSMg01no052_i13.b1 CHROMAT_FILE:
MSMg01no052_i13.b1 PHD_FILE: MSMg01no052_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:11 2005
(593 letters)
>mm_chr1_12938362_12939354
Length = 993
Score = 1085 bits (561), Expect = 0.0
Identities = 584/599 (97%), Gaps = 13/599 (2%)
Strand = Plus / Minus
Query: 1 cttgtatagaacgtaatttcacccatcaaaccatttcatcactccctctatgtatatgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 cttgtatagaacgtaatttcacccatcaaaccatttcatcactccctctatgtatatgaa 537
Query: 61 tgtgtatacacacacacacacacaa----------acacacacacacatcattatatata 110
||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 536 tgtgtatacacacacacacacacaaacacacacacacacacacacacatcattatatata 477
Query: 111 tgtgtgtgtatgtgtatatcattatatatgtacacacacatatttgtcaatatactttgc 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tgtgtgtgtatgtgtatatcattatatatgtacacacacatatttgtcaatatactttgc 417
Query: 171 atgtttatatcttttgtttatggtactgttttgaactcctaatcattgtgtgtatctgga 230
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 atgtttatatcttttctttatggtactgttttgaactcctaatcattgtgtgtatctgga 357
Query: 231 aatgtagttgttgttttttttaaacatgtcttacttatctccccatcccctcatgtctgt 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aatgtagttgttgttttttttaaacatgtcttacttatctccccatcccctcatgtctgt 297
Query: 291 cctttgcccttgcaacctgaaccccaaaataaacacagacacacacacactcacaaaata 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cctttgcccttgcaacctgaaccccaaaataaacacagacacacacacactcacaaaata 237
Query: 351 aacaacaacaacaacaacagcaaaaaccaaaactgagcatacaaaatatttcatcatgga 410
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 ---aacaacaacaacaacagcaaaaaccaaaactgagcatacaaaatatttcatcatgga 180
Query: 411 agctgtagtgtgccacactatgtcctactgtatacccctctgtccacacatctttatttg 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 agctgtagtgtgccacactatgtcctactgtatacccctctgtccacacatctttatttg 120
Query: 471 cacatgttcgttgcagtgagtcactggtctggttcaagaatcagaggtctctggattctg 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 cacatgttcgttgcagtgagtcactggtctggttcaagaatcagaggtctctggattctg 60
Query: 531 tgacaccatcaatattggatcctcacctggactcctcctggtgattctattgttgccct 589
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 tgacaccatcagtattggatcctcacctggactcctcctggtgattctattgttgccct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_i13.g1 MSMg01no052_i13.g1 CHROMAT_FILE:
MSMg01no052_i13.g1 PHD_FILE: MSMg01no052_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:11 2005
(517 letters)
>mm_chr1_12812584_12813500
Length = 917
Score = 901 bits (466), Expect = 0.0
Identities = 500/518 (96%), Gaps = 12/518 (2%)
Strand = Plus / Plus
Query: 1 caggccagccagggctacatggtgagaccttctctcagaaaaa-aaaaacacaaagaaag 59
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 211 caggccagccagggctacatggtgagaccttctctcagaaaaacaaaaacacaaagaaag 270
Query: 60 agaaggagtgggggaaggagaagaaagacaggtggccacaataattttaaggactcttta 119
||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 271 agaaggagtgggggaaggagaagaaagacaggtggccacaacaat-----------ttta 319
Query: 120 gttggaatctgtgccaactaaaaggaaatctgtatagactgaaggaaaattccatgtccc 179
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 320 gttggaatctgtgccgactaaaaggaaatctatatagactgaaggaaaattccatgtccc 379
Query: 180 agtgaaaaagtaaagaacaaaatcaacatggcatggcaaaaagaggaagagagagagaga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agtgaaaaagtaaagaacaaaatcaacatggcatggcaaaaagaggaagagagagagaga 439
Query: 240 aaagaaaagaaggaaggaagaaatggcagagcgcagctgctagtggtcttggttcactgt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaagaaaagaaggaaggaagaaatggcagagcgcagctgctagtggtcttggttcactgt 499
Query: 300 ggaggttgtgtgcacctactaactgaaaactgtgatgtttctagtgtgtagccatggaaa 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggaggttgtgtgcacctaataactgaaaactgtgatgtttctagtgtgtagccatggaaa 559
Query: 360 tccccatcttacatcaggcgacttgtttcttgaatttcaggaattgtgtaattacaaaac 419
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 560 tccccatcttacatcaggcgacttgtttcttgaatttcagcaattgtgtaattacaaaac 619
Query: 420 acagaccaagaggccggagggagggctcaatagtgcagagtgcatactgttctttcagag 479
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 620 acagaccaagaggccggagggagggctcagtagtgcagagtgcatactgttctttcagag 679
Query: 480 gacccaagttcagttcccagcacccgtgatgggcagct 517
||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gacccaagttcagttcccagcacccgtgatgggcagct 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
