Query= MSMg01no052_m20.b1 MSMg01no052_m20.b1 CHROMAT_FILE:
MSMg01no052_m20.b1 PHD_FILE: MSMg01no052_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:31 2005
(509 letters)
>mm_chr1_154367831_154368739
Length = 909
Score = 915 bits (473), Expect = 0.0
Identities = 502/517 (97%), Gaps = 10/517 (1%)
Strand = Plus / Plus
Query: 2 agcaaagagttaggggtgggtagtagcttcagacacttgatctaa-gtaaggcgagacat 60
||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||
Sbjct: 192 agcaaagagttaggggtgggtagcagcttcagacacttgatctactgtaaagcgagacat 251
Query: 61 agcttgtctccctggcacacctaaataccaccaccagggggca---------gatctgtg 111
||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 252 agcttgtctccctggcacacctaaataccaccaccagggggcatgagaggcagatctgtg 311
Query: 112 gataagggcacttgctgtgtgagcatgagccccgtcccctttacccccctgtcagggttg 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gataagggcacttgctgtgtgagcatgagccccgtcccctttacccccctgtcagggttg 371
Query: 172 cttgggcttgctggccaccagccttgcttcatgctcagagagagcaggacacattttgta 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cttgggcttgctggccaccagccttgcttcatgctcagagagagcaggacacattttgta 431
Query: 232 ctgttctggccacacacacatacactcatacaaatatgtgcatatgcccctgccatcact 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctgttctggccacacacacatacactcatacaaatatgtgcatatgcccctgccatcact 491
Query: 292 aggatccaaatgaaaaggaagacatttcatgacctttctgctgtcagcacctgagcaggg 351
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 492 aggatccaaatgaaaaggaagacacttcatgacctttctgctgtcagcacctgagcaggg 551
Query: 352 tgtgcgtgtggctggcacctgctgtcgtggagaacacgcctacctttgtcctccgagatg 411
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 552 tgtgcgtgtggctggcacctgctgtcgtggagagcacgcctacctttgtcctccgagatg 611
Query: 412 acctgcaccagctcatactcctcggcggggtccgactccaggttgtgcttcgacatcgct 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 acctgcaccagctcatactcctcggcggggtccgactccaggttgtgcttcgacatcgct 671
Query: 472 ctctggatcacagcgggggtcttatcctggcttgtca 508
|||||||||||||||||||||||||||||||||||||
Sbjct: 672 ctctggatcacagcgggggtcttatcctggcttgtca 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_m20.g1 MSMg01no052_m20.g1 CHROMAT_FILE:
MSMg01no052_m20.g1 PHD_FILE: MSMg01no052_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:31 2005
(443 letters)
>mm_chr1_154529560_154530402
Length = 843
Score = 547 bits (283), Expect = e-160
Identities = 302/313 (96%), Gaps = 8/313 (2%)
Strand = Plus / Minus
Query: 139 tgtggcatgatgaagggcagcaaagacagctaccggga--------tatgtgtgtgtgtg 190
|||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 843 tgtggcatgatgaagggcagcaaagacagctaccgggatgtgtgtgtgtgtgtgtgtgtg 784
Query: 191 tgtgtgtgtgtgtgtatggacatcagaggacttcttgccagagtcgattctttccttctg 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 tgtgtgtgtgtgtgtatggacatcagaggacttcttgccagagtcgattctttccttctg 724
Query: 251 ctgtgcgtgtcccagggatcaagttggggtcatctggcttggcagcaagtctcttcaccc 310
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ctatgcgtgtcccagggatcaagttggggtcatctggcttggcagcaagtctcttcaccc 664
Query: 311 actgaggcatcttgccagcctggagctcagagttttgacatccgcatgacactcttctgt 370
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 663 actgaggcatcttgccagcctggagctcagagttttgacatctgcatgacactcttctgt 604
Query: 371 gaatagcacattggctctgtgaggggagctggagtggagaggtgaggctctgggtcagac 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gaatagcacattggctctgtgaggggagctggagtggagaggtgaggctctgggtcagac 544
Query: 431 acttcccctgtcg 443
|||||||||||||
Sbjct: 543 acttcccctgtcg 531
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
